Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS03035

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS03030 and BWI76_RS03035 overlap by 1 nucleotidesBWI76_RS03035 and BWI76_RS03040 are separated by 98 nucleotides BWI76_RS03030: BWI76_RS03030 - valine--tRNA ligase, at 619,030 to 621,885 _RS03030 BWI76_RS03035: BWI76_RS03035 - DNA polymerase III subunit chi, at 621,885 to 622,328 _RS03035 BWI76_RS03040: BWI76_RS03040 - leucyl aminopeptidase, at 622,427 to 623,938 _RS03040 Position (kb) 621 622 623Strain fitness (log2 ratio) -2 -1 0 1at 622.466 kb on - strandat 622.850 kb on - strand, within BWI76_RS03040at 622.895 kb on - strand, within BWI76_RS03040

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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622,466 - +0.2
622,850 - BWI76_RS03040 0.28 -0.1
622,895 - BWI76_RS03040 0.31 -1.9

Or see this region's nucleotide sequence