Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22225

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS22215 and BWI76_RS22220 overlap by 4 nucleotidesBWI76_RS22220 and BWI76_RS22225 are separated by 13 nucleotidesBWI76_RS22225 and BWI76_RS22230 are separated by 17 nucleotidesBWI76_RS22230 and BWI76_RS22235 are separated by 133 nucleotides BWI76_RS22215: BWI76_RS22215 - PTS sorbitol transporter subunit IIC, at 4,632,124 to 4,632,687 _RS22215 BWI76_RS22220: BWI76_RS22220 - PTS glucitol/sorbitol transporter subunit IIB, at 4,632,684 to 4,633,661 _RS22220 BWI76_RS22225: BWI76_RS22225 - PTS sorbitol transporter subunit IIA, at 4,633,675 to 4,634,037 _RS22225 BWI76_RS22230: BWI76_RS22230 - Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) (from data), at 4,634,055 to 4,634,834 _RS22230 BWI76_RS22235: BWI76_RS22235 - transcriptional regulator GutM, at 4,634,968 to 4,635,327 _RS22235 Position (kb) 4633 4634 4635Strain fitness (log2 ratio) -1 0 1at 4632.994 kb on - strand, within BWI76_RS22220at 4633.055 kb on + strand, within BWI76_RS22220at 4633.335 kb on - strand, within BWI76_RS22220at 4633.346 kb on - strand, within BWI76_RS22220at 4633.415 kb on + strand, within BWI76_RS22220at 4633.551 kb on + strand, within BWI76_RS22220at 4633.559 kb on - strand, within BWI76_RS22220at 4633.559 kb on - strand, within BWI76_RS22220at 4633.729 kb on + strand, within BWI76_RS22225at 4633.734 kb on + strand, within BWI76_RS22225at 4633.793 kb on + strand, within BWI76_RS22225at 4633.894 kb on + strand, within BWI76_RS22225at 4633.921 kb on - strand, within BWI76_RS22225at 4633.922 kb on + strand, within BWI76_RS22225at 4633.977 kb on - strand, within BWI76_RS22225at 4634.085 kb on + strandat 4634.184 kb on + strand, within BWI76_RS22230at 4634.454 kb on - strand, within BWI76_RS22230at 4634.508 kb on + strand, within BWI76_RS22230at 4634.581 kb on + strand, within BWI76_RS22230at 4634.664 kb on - strand, within BWI76_RS22230at 4634.679 kb on - strand, within BWI76_RS22230

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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4,632,994 - BWI76_RS22220 0.32 -0.2
4,633,055 + BWI76_RS22220 0.38 -0.0
4,633,335 - BWI76_RS22220 0.67 +1.6
4,633,346 - BWI76_RS22220 0.68 -0.7
4,633,415 + BWI76_RS22220 0.75 +0.4
4,633,551 + BWI76_RS22220 0.89 -1.1
4,633,559 - BWI76_RS22220 0.89 -0.5
4,633,559 - BWI76_RS22220 0.89 -1.0
4,633,729 + BWI76_RS22225 0.15 -1.1
4,633,734 + BWI76_RS22225 0.16 +0.3
4,633,793 + BWI76_RS22225 0.33 -0.6
4,633,894 + BWI76_RS22225 0.60 -0.9
4,633,921 - BWI76_RS22225 0.68 +0.1
4,633,922 + BWI76_RS22225 0.68 -0.2
4,633,977 - BWI76_RS22225 0.83 -0.5
4,634,085 + -0.2
4,634,184 + BWI76_RS22230 0.17 +0.2
4,634,454 - BWI76_RS22230 0.51 -0.1
4,634,508 + BWI76_RS22230 0.58 -0.1
4,634,581 + BWI76_RS22230 0.67 +0.1
4,634,664 - BWI76_RS22230 0.78 -0.7
4,634,679 - BWI76_RS22230 0.80 -0.7

Or see this region's nucleotide sequence