Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19860

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19855 and BWI76_RS19860 are separated by 59 nucleotidesBWI76_RS19860 and BWI76_RS19865 are separated by 338 nucleotidesBWI76_RS19865 and BWI76_RS19870 are separated by 42 nucleotides BWI76_RS19855: BWI76_RS19855 - AI-2E family transporter, at 4,151,203 to 4,152,309 _RS19855 BWI76_RS19860: BWI76_RS19860 - hypothetical protein, at 4,152,369 to 4,152,791 _RS19860 BWI76_RS19865: BWI76_RS19865 - ecotin, at 4,153,130 to 4,153,621 _RS19865 BWI76_RS19870: BWI76_RS19870 - malate:quinone oxidoreductase, at 4,153,664 to 4,155,298 _RS19870 Position (kb) 4152 4153Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4151.447 kb on - strand, within BWI76_RS19855at 4151.480 kb on + strand, within BWI76_RS19855at 4151.513 kb on - strand, within BWI76_RS19855at 4151.622 kb on + strand, within BWI76_RS19855at 4152.025 kb on - strand, within BWI76_RS19855at 4152.231 kb on + strandat 4152.239 kb on - strandat 4152.303 kb on + strandat 4152.304 kb on + strandat 4152.325 kb on - strandat 4152.332 kb on + strandat 4152.332 kb on + strandat 4152.332 kb on + strandat 4152.332 kb on + strandat 4152.332 kb on + strandat 4152.332 kb on + strandat 4152.338 kb on - strandat 4152.340 kb on + strandat 4152.340 kb on + strandat 4152.340 kb on - strandat 4152.515 kb on + strand, within BWI76_RS19860at 4152.559 kb on + strand, within BWI76_RS19860at 4152.559 kb on + strand, within BWI76_RS19860at 4152.559 kb on + strand, within BWI76_RS19860at 4153.005 kb on + strandat 4153.011 kb on - strandat 4153.060 kb on + strandat 4153.062 kb on + strandat 4153.163 kb on - strandat 4153.249 kb on - strand, within BWI76_RS19865at 4153.396 kb on - strand, within BWI76_RS19865at 4153.396 kb on - strand, within BWI76_RS19865at 4153.607 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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4,151,447 - BWI76_RS19855 0.22 -0.1
4,151,480 + BWI76_RS19855 0.25 -0.1
4,151,513 - BWI76_RS19855 0.28 -1.5
4,151,622 + BWI76_RS19855 0.38 +0.6
4,152,025 - BWI76_RS19855 0.74 +0.4
4,152,231 + +3.9
4,152,239 - +1.9
4,152,303 + -0.7
4,152,304 + -0.3
4,152,325 - -1.7
4,152,332 + -0.2
4,152,332 + -0.7
4,152,332 + -0.2
4,152,332 + -0.1
4,152,332 + +0.1
4,152,332 + +0.6
4,152,338 - -0.8
4,152,340 + +1.6
4,152,340 + -2.0
4,152,340 - -0.7
4,152,515 + BWI76_RS19860 0.35 -1.8
4,152,559 + BWI76_RS19860 0.45 -1.9
4,152,559 + BWI76_RS19860 0.45 -1.8
4,152,559 + BWI76_RS19860 0.45 -0.3
4,153,005 + -0.2
4,153,011 - -0.2
4,153,060 + -1.4
4,153,062 + +0.9
4,153,163 - +0.7
4,153,249 - BWI76_RS19865 0.24 -0.3
4,153,396 - BWI76_RS19865 0.54 +1.0
4,153,396 - BWI76_RS19865 0.54 -0.1
4,153,607 + -0.4

Or see this region's nucleotide sequence