Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14620

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS14610 and BWI76_RS14615 are separated by 13 nucleotidesBWI76_RS14615 and BWI76_RS14620 overlap by 1 nucleotidesBWI76_RS14620 and BWI76_RS14625 are separated by 171 nucleotidesBWI76_RS14625 and BWI76_RS14630 are separated by 51 nucleotides BWI76_RS14610: BWI76_RS14610 - putative hydrolase, at 3,066,465 to 3,067,544 _RS14610 BWI76_RS14615: BWI76_RS14615 - hypothetical protein, at 3,067,558 to 3,068,313 _RS14615 BWI76_RS14620: BWI76_RS14620 - acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase, at 3,068,313 to 3,069,425 _RS14620 BWI76_RS14625: BWI76_RS14625 - protein TolA, at 3,069,597 to 3,070,025 _RS14625 BWI76_RS14630: BWI76_RS14630 - TonB-dependent receptor, at 3,070,077 to 3,072,041 _RS14630 Position (kb) 3068 3069 3070Strain fitness (log2 ratio) -2 -1 0 1at 3067.315 kb on - strand, within BWI76_RS14610at 3067.504 kb on - strandat 3067.587 kb on + strandat 3067.587 kb on + strandat 3067.595 kb on - strandat 3067.796 kb on + strand, within BWI76_RS14615at 3068.897 kb on + strand, within BWI76_RS14620at 3069.389 kb on + strandat 3069.850 kb on - strand, within BWI76_RS14625at 3070.008 kb on - strandat 3070.193 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
remove
3,067,315 - BWI76_RS14610 0.79 -0.9
3,067,504 - +0.7
3,067,587 + -0.2
3,067,587 + +0.7
3,067,595 - -2.1
3,067,796 + BWI76_RS14615 0.31 -0.3
3,068,897 + BWI76_RS14620 0.52 -0.9
3,069,389 + -0.3
3,069,850 - BWI76_RS14625 0.59 -0.2
3,070,008 - +0.3
3,070,193 + -0.2

Or see this region's nucleotide sequence