Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14610 and BWI76_RS14615 are separated by 13 nucleotides BWI76_RS14615 and BWI76_RS14620 overlap by 1 nucleotides BWI76_RS14620 and BWI76_RS14625 are separated by 171 nucleotides BWI76_RS14625 and BWI76_RS14630 are separated by 51 nucleotides
BWI76_RS14610: BWI76_RS14610 - putative hydrolase, at 3,066,465 to 3,067,544
_RS14610
BWI76_RS14615: BWI76_RS14615 - hypothetical protein, at 3,067,558 to 3,068,313
_RS14615
BWI76_RS14620: BWI76_RS14620 - acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase, at 3,068,313 to 3,069,425
_RS14620
BWI76_RS14625: BWI76_RS14625 - protein TolA, at 3,069,597 to 3,070,025
_RS14625
BWI76_RS14630: BWI76_RS14630 - TonB-dependent receptor, at 3,070,077 to 3,072,041
_RS14630
Position (kb)
3068
3069
3070 Strain fitness (log2 ratio)
-2
-1
0
1 at 3067.315 kb on - strand, within BWI76_RS14610 at 3067.504 kb on - strand at 3067.587 kb on + strand at 3067.587 kb on + strand at 3067.595 kb on - strand at 3067.796 kb on + strand, within BWI76_RS14615 at 3068.897 kb on + strand, within BWI76_RS14620 at 3069.389 kb on + strand at 3069.850 kb on - strand, within BWI76_RS14625 at 3070.008 kb on - strand at 3070.193 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 3,067,315 - BWI76_RS14610 0.79 -0.9 3,067,504 - +0.7 3,067,587 + -0.2 3,067,587 + +0.7 3,067,595 - -2.1 3,067,796 + BWI76_RS14615 0.31 -0.3 3,068,897 + BWI76_RS14620 0.52 -0.9 3,069,389 + -0.3 3,069,850 - BWI76_RS14625 0.59 -0.2 3,070,008 - +0.3 3,070,193 + -0.2
Or see this region's nucleotide sequence