Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03850 and BWI76_RS03855 are separated by 136 nucleotides BWI76_RS03855 and BWI76_RS03860 are separated by 12 nucleotides BWI76_RS03860 and BWI76_RS03865 are separated by 1 nucleotides
BWI76_RS03850: BWI76_RS03850 - 2-oxo-hepta-3-ene-1,7-dioic acid hydratase, at 796,982 to 797,785
_RS03850
BWI76_RS03855: BWI76_RS03855 - 5-carboxymethyl-2-hydroxymuconate Delta-isomerase, at 797,922 to 798,302
_RS03855
BWI76_RS03860: BWI76_RS03860 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 798,315 to 799,172
_RS03860
BWI76_RS03865: BWI76_RS03865 - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase, at 799,174 to 800,640
_RS03865
Position (kb) 798
799
800 Strain fitness (log2 ratio) -1
0
1
2 at 797.440 kb on - strand, within BWI76_RS03850 at 797.544 kb on + strand, within BWI76_RS03850 at 797.552 kb on - strand at 797.769 kb on - strand at 797.849 kb on - strand at 798.231 kb on - strand, within BWI76_RS03855 at 798.313 kb on + strand at 798.343 kb on + strand at 798.496 kb on + strand, within BWI76_RS03860 at 798.504 kb on - strand, within BWI76_RS03860 at 798.732 kb on - strand, within BWI76_RS03860 at 798.886 kb on + strand, within BWI76_RS03860 at 798.907 kb on - strand, within BWI76_RS03860 at 798.996 kb on - strand, within BWI76_RS03860 at 798.996 kb on - strand, within BWI76_RS03860 at 799.214 kb on + strand at 799.250 kb on - strand at 799.274 kb on + strand at 799.282 kb on - strand at 799.422 kb on - strand, within BWI76_RS03865 at 799.445 kb on - strand, within BWI76_RS03865 at 799.519 kb on + strand, within BWI76_RS03865 at 799.832 kb on + strand, within BWI76_RS03865 at 799.840 kb on - strand, within BWI76_RS03865 at 799.850 kb on - strand, within BWI76_RS03865 at 800.010 kb on + strand, within BWI76_RS03865 at 800.136 kb on - strand, within BWI76_RS03865
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 797,440 - BWI76_RS03850 0.57 +0.4 797,544 + BWI76_RS03850 0.70 -0.2 797,552 - +0.8 797,769 - -0.2 797,849 - -0.5 798,231 - BWI76_RS03855 0.81 +0.0 798,313 + -0.5 798,343 + -0.0 798,496 + BWI76_RS03860 0.21 +0.4 798,504 - BWI76_RS03860 0.22 +0.5 798,732 - BWI76_RS03860 0.49 -0.1 798,886 + BWI76_RS03860 0.67 +0.5 798,907 - BWI76_RS03860 0.69 -0.8 798,996 - BWI76_RS03860 0.79 -0.2 798,996 - BWI76_RS03860 0.79 -0.3 799,214 + +1.0 799,250 - +0.6 799,274 + +0.8 799,282 - -0.9 799,422 - BWI76_RS03865 0.17 -0.8 799,445 - BWI76_RS03865 0.18 +0.4 799,519 + BWI76_RS03865 0.24 +1.3 799,832 + BWI76_RS03865 0.45 +0.6 799,840 - BWI76_RS03865 0.45 -0.2 799,850 - BWI76_RS03865 0.46 +2.5 800,010 + BWI76_RS03865 0.57 +1.0 800,136 - BWI76_RS03865 0.66 -0.5
Or see this region's nucleotide sequence