Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03590 and BWI76_RS03595 are separated by 53 nucleotides BWI76_RS03595 and BWI76_RS03600 are separated by 15 nucleotides BWI76_RS03600 and BWI76_RS03605 are separated by 17 nucleotides BWI76_RS03605 and BWI76_RS03610 are separated by 406 nucleotides
BWI76_RS03590: BWI76_RS03590 - acetaldehyde dehydrogenase (acetylating), at 744,308 to 745,909
_RS03590
BWI76_RS03595: BWI76_RS03595 - ethanolamine utilization protein EutM, at 745,963 to 746,241
_RS03595
BWI76_RS03600: BWI76_RS03600 - BMC domain-containing protein, at 746,257 to 746,541
_RS03600
BWI76_RS03605: BWI76_RS03605 - BMC domain-containing protein, at 746,559 to 746,837
_RS03605
BWI76_RS03610: BWI76_RS03610 - hypothetical protein, at 747,244 to 747,762
_RS03610
Position (kb) 746
747 Strain fitness (log2 ratio) -2
-1
0
1 at 745.306 kb on - strand, within BWI76_RS03590 at 745.306 kb on - strand, within BWI76_RS03590 at 745.354 kb on + strand, within BWI76_RS03590 at 745.362 kb on - strand, within BWI76_RS03590 at 745.450 kb on + strand, within BWI76_RS03590 at 745.869 kb on - strand at 745.883 kb on + strand at 746.034 kb on - strand, within BWI76_RS03595 at 746.173 kb on - strand, within BWI76_RS03595 at 746.505 kb on - strand, within BWI76_RS03600 at 746.523 kb on + strand at 746.557 kb on - strand at 746.557 kb on - strand at 746.695 kb on + strand, within BWI76_RS03605 at 746.725 kb on - strand, within BWI76_RS03605 at 746.769 kb on - strand, within BWI76_RS03605 at 746.819 kb on + strand at 746.819 kb on + strand at 746.827 kb on - strand at 746.827 kb on - strand at 747.301 kb on + strand, within BWI76_RS03610 at 747.338 kb on + strand, within BWI76_RS03610
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 745,306 - BWI76_RS03590 0.62 -0.8 745,306 - BWI76_RS03590 0.62 -0.8 745,354 + BWI76_RS03590 0.65 -0.5 745,362 - BWI76_RS03590 0.66 +0.7 745,450 + BWI76_RS03590 0.71 +0.2 745,869 - -0.3 745,883 + +0.3 746,034 - BWI76_RS03595 0.25 -2.0 746,173 - BWI76_RS03595 0.75 -1.5 746,505 - BWI76_RS03600 0.87 +0.4 746,523 + -1.4 746,557 - -0.4 746,557 - +1.3 746,695 + BWI76_RS03605 0.49 +0.2 746,725 - BWI76_RS03605 0.59 +0.1 746,769 - BWI76_RS03605 0.75 -1.5 746,819 + -0.8 746,819 + +1.1 746,827 - -0.7 746,827 - -0.4 747,301 + BWI76_RS03610 0.11 +0.2 747,338 + BWI76_RS03610 0.18 +0.6
Or see this region's nucleotide sequence