Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26670 and BWI76_RS26675 are separated by 159 nucleotides BWI76_RS26675 and BWI76_RS26680 are separated by 185 nucleotides
BWI76_RS26670: BWI76_RS26670 - two-component sensor histidine kinase, at 5,521,522 to 5,522,883
_RS26670
BWI76_RS26675: BWI76_RS26675 - phosphoesterase PA-phosphatase-like protein, at 5,523,043 to 5,524,314
_RS26675
BWI76_RS26680: BWI76_RS26680 - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ, at 5,524,500 to 5,525,342
_RS26680
Position (kb)
5523
5524
5525 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5522.084 kb on + strand, within BWI76_RS26670 at 5522.150 kb on + strand, within BWI76_RS26670 at 5522.177 kb on + strand, within BWI76_RS26670 at 5522.219 kb on + strand, within BWI76_RS26670 at 5522.269 kb on - strand, within BWI76_RS26670 at 5522.349 kb on + strand, within BWI76_RS26670 at 5522.357 kb on - strand, within BWI76_RS26670 at 5522.400 kb on - strand, within BWI76_RS26670 at 5522.421 kb on + strand, within BWI76_RS26670 at 5522.422 kb on - strand, within BWI76_RS26670 at 5522.439 kb on - strand, within BWI76_RS26670 at 5522.564 kb on - strand, within BWI76_RS26670 at 5522.660 kb on - strand at 5522.660 kb on - strand, within BWI76_RS26670 at 5522.662 kb on + strand, within BWI76_RS26670 at 5522.718 kb on - strand, within BWI76_RS26670 at 5522.774 kb on - strand at 5523.007 kb on + strand at 5523.088 kb on - strand at 5523.105 kb on - strand at 5523.172 kb on - strand, within BWI76_RS26675 at 5523.195 kb on + strand, within BWI76_RS26675 at 5523.195 kb on + strand, within BWI76_RS26675 at 5523.239 kb on - strand, within BWI76_RS26675 at 5523.355 kb on - strand, within BWI76_RS26675 at 5523.408 kb on + strand, within BWI76_RS26675 at 5523.526 kb on + strand, within BWI76_RS26675 at 5523.608 kb on + strand, within BWI76_RS26675 at 5523.647 kb on + strand, within BWI76_RS26675 at 5523.647 kb on + strand, within BWI76_RS26675 at 5523.647 kb on + strand, within BWI76_RS26675 at 5523.652 kb on + strand, within BWI76_RS26675 at 5523.655 kb on - strand, within BWI76_RS26675 at 5523.655 kb on - strand, within BWI76_RS26675 at 5523.698 kb on + strand, within BWI76_RS26675 at 5523.698 kb on + strand, within BWI76_RS26675 at 5523.706 kb on - strand, within BWI76_RS26675 at 5523.762 kb on + strand, within BWI76_RS26675 at 5523.820 kb on + strand, within BWI76_RS26675 at 5523.828 kb on - strand, within BWI76_RS26675 at 5523.916 kb on + strand, within BWI76_RS26675 at 5523.921 kb on - strand, within BWI76_RS26675 at 5523.997 kb on + strand, within BWI76_RS26675 at 5524.214 kb on + strand at 5524.397 kb on - strand at 5524.432 kb on + strand at 5524.442 kb on + strand at 5524.445 kb on - strand at 5524.512 kb on + strand at 5524.515 kb on - strand at 5524.538 kb on - strand at 5524.586 kb on - strand, within BWI76_RS26680 at 5524.633 kb on - strand, within BWI76_RS26680 at 5524.719 kb on - strand, within BWI76_RS26680 at 5524.760 kb on + strand, within BWI76_RS26680 at 5524.784 kb on + strand, within BWI76_RS26680 at 5524.827 kb on + strand, within BWI76_RS26680 at 5524.889 kb on + strand, within BWI76_RS26680 at 5524.938 kb on - strand, within BWI76_RS26680 at 5524.953 kb on - strand, within BWI76_RS26680
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 5,522,084 + BWI76_RS26670 0.41 -3.0 5,522,150 + BWI76_RS26670 0.46 +1.0 5,522,177 + BWI76_RS26670 0.48 -2.6 5,522,219 + BWI76_RS26670 0.51 -0.9 5,522,269 - BWI76_RS26670 0.55 -1.4 5,522,349 + BWI76_RS26670 0.61 +0.1 5,522,357 - BWI76_RS26670 0.61 -1.5 5,522,400 - BWI76_RS26670 0.64 -1.9 5,522,421 + BWI76_RS26670 0.66 -1.5 5,522,422 - BWI76_RS26670 0.66 -2.3 5,522,439 - BWI76_RS26670 0.67 +0.4 5,522,564 - BWI76_RS26670 0.77 -1.1 5,522,660 - +0.1 5,522,660 - BWI76_RS26670 0.84 -3.0 5,522,662 + BWI76_RS26670 0.84 -1.1 5,522,718 - BWI76_RS26670 0.88 -0.3 5,522,774 - -0.7 5,523,007 + +0.9 5,523,088 - +1.3 5,523,105 - -1.0 5,523,172 - BWI76_RS26675 0.10 -0.1 5,523,195 + BWI76_RS26675 0.12 -0.1 5,523,195 + BWI76_RS26675 0.12 -1.1 5,523,239 - BWI76_RS26675 0.15 -0.4 5,523,355 - BWI76_RS26675 0.25 +0.4 5,523,408 + BWI76_RS26675 0.29 +0.8 5,523,526 + BWI76_RS26675 0.38 +0.2 5,523,608 + BWI76_RS26675 0.44 -0.1 5,523,647 + BWI76_RS26675 0.47 +0.2 5,523,647 + BWI76_RS26675 0.47 -1.7 5,523,647 + BWI76_RS26675 0.47 -0.7 5,523,652 + BWI76_RS26675 0.48 -2.1 5,523,655 - BWI76_RS26675 0.48 -0.4 5,523,655 - BWI76_RS26675 0.48 -0.4 5,523,698 + BWI76_RS26675 0.51 -0.6 5,523,698 + BWI76_RS26675 0.51 -0.3 5,523,706 - BWI76_RS26675 0.52 -1.0 5,523,762 + BWI76_RS26675 0.57 -0.3 5,523,820 + BWI76_RS26675 0.61 -1.3 5,523,828 - BWI76_RS26675 0.62 -0.2 5,523,916 + BWI76_RS26675 0.69 +0.9 5,523,921 - BWI76_RS26675 0.69 -0.7 5,523,997 + BWI76_RS26675 0.75 -0.6 5,524,214 + +0.2 5,524,397 - +0.5 5,524,432 + -3.0 5,524,442 + -0.5 5,524,445 - -0.0 5,524,512 + -1.0 5,524,515 - -1.1 5,524,538 - +0.5 5,524,586 - BWI76_RS26680 0.10 +0.7 5,524,633 - BWI76_RS26680 0.16 -0.7 5,524,719 - BWI76_RS26680 0.26 -0.7 5,524,760 + BWI76_RS26680 0.31 +2.1 5,524,784 + BWI76_RS26680 0.34 +1.2 5,524,827 + BWI76_RS26680 0.39 +0.7 5,524,889 + BWI76_RS26680 0.46 -0.1 5,524,938 - BWI76_RS26680 0.52 +0.6 5,524,953 - BWI76_RS26680 0.54 +0.6
Or see this region's nucleotide sequence