Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18910

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18905 and BWI76_RS18910 are separated by 287 nucleotidesBWI76_RS18910 and BWI76_RS18915 are separated by 38 nucleotides BWI76_RS18905: BWI76_RS18905 - putrescine/spermidine ABC transporter, at 3,920,828 to 3,922,186 _RS18905 BWI76_RS18910: BWI76_RS18910 - LysR family transcriptional regulator, at 3,922,474 to 3,923,364 _RS18910 BWI76_RS18915: BWI76_RS18915 - NAD(P)-dependent oxidoreductase, at 3,923,403 to 3,924,227 _RS18915 Position (kb) 3922 3923 3924Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3921.562 kb on - strand, within BWI76_RS18905at 3921.880 kb on + strand, within BWI76_RS18905at 3921.903 kb on - strand, within BWI76_RS18905at 3922.283 kb on + strandat 3922.490 kb on + strandat 3922.503 kb on + strandat 3922.586 kb on + strand, within BWI76_RS18910at 3922.673 kb on + strand, within BWI76_RS18910at 3922.681 kb on - strand, within BWI76_RS18910at 3922.683 kb on + strand, within BWI76_RS18910at 3922.696 kb on - strand, within BWI76_RS18910at 3922.899 kb on + strand, within BWI76_RS18910at 3923.095 kb on + strand, within BWI76_RS18910at 3923.263 kb on - strand, within BWI76_RS18910at 3923.456 kb on - strandat 3923.834 kb on - strand, within BWI76_RS18915at 3924.034 kb on - strand, within BWI76_RS18915at 3924.265 kb on - strandat 3924.265 kb on - strandat 3924.265 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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3,921,562 - BWI76_RS18905 0.54 -0.8
3,921,880 + BWI76_RS18905 0.77 +4.5
3,921,903 - BWI76_RS18905 0.79 -0.1
3,922,283 + +0.4
3,922,490 + -1.2
3,922,503 + -0.2
3,922,586 + BWI76_RS18910 0.13 -1.1
3,922,673 + BWI76_RS18910 0.22 +0.4
3,922,681 - BWI76_RS18910 0.23 -2.0
3,922,683 + BWI76_RS18910 0.23 -0.2
3,922,696 - BWI76_RS18910 0.25 -0.4
3,922,899 + BWI76_RS18910 0.48 -0.2
3,923,095 + BWI76_RS18910 0.70 -0.5
3,923,263 - BWI76_RS18910 0.89 +0.0
3,923,456 - -0.3
3,923,834 - BWI76_RS18915 0.52 +0.1
3,924,034 - BWI76_RS18915 0.76 +0.6
3,924,265 - +0.9
3,924,265 - -0.9
3,924,265 - +1.1

Or see this region's nucleotide sequence