Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07690

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07680 and BWI76_RS07685 overlap by 8 nucleotidesBWI76_RS07685 and BWI76_RS07690 are separated by 53 nucleotidesBWI76_RS07690 and BWI76_RS07695 are separated by 67 nucleotides BWI76_RS07680: BWI76_RS07680 - transketolase, at 1,627,339 to 1,628,169 _RS07680 BWI76_RS07685: BWI76_RS07685 - transketolase, at 1,628,162 to 1,629,097 _RS07685 BWI76_RS07690: BWI76_RS07690 - enterochelin synthetase component D, at 1,629,151 to 1,629,774 _RS07690 BWI76_RS07695: BWI76_RS07695 - TonB-dependent siderophore receptor, at 1,629,842 to 1,632,091 _RS07695 Position (kb) 1629 1630Strain fitness (log2 ratio) -2 -1 0 1at 1628.179 kb on + strandat 1628.630 kb on - strand, within BWI76_RS07685at 1629.163 kb on + strandat 1629.281 kb on - strand, within BWI76_RS07690at 1629.496 kb on + strand, within BWI76_RS07690at 1629.507 kb on + strand, within BWI76_RS07690at 1629.515 kb on - strand, within BWI76_RS07690at 1629.542 kb on + strand, within BWI76_RS07690at 1629.685 kb on - strand, within BWI76_RS07690at 1630.091 kb on + strand, within BWI76_RS07695at 1630.099 kb on - strand, within BWI76_RS07695at 1630.143 kb on + strand, within BWI76_RS07695at 1630.186 kb on + strandat 1630.189 kb on - strand, within BWI76_RS07695at 1630.391 kb on + strand, within BWI76_RS07695at 1630.574 kb on + strand, within BWI76_RS07695at 1630.574 kb on + strand, within BWI76_RS07695at 1630.582 kb on - strand, within BWI76_RS07695at 1630.582 kb on - strand, within BWI76_RS07695at 1630.611 kb on + strand, within BWI76_RS07695at 1630.712 kb on - strand, within BWI76_RS07695

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,628,179 + -0.4
1,628,630 - BWI76_RS07685 0.50 +0.0
1,629,163 + +0.7
1,629,281 - BWI76_RS07690 0.21 -0.6
1,629,496 + BWI76_RS07690 0.55 -2.7
1,629,507 + BWI76_RS07690 0.57 -1.7
1,629,515 - BWI76_RS07690 0.58 -1.6
1,629,542 + BWI76_RS07690 0.63 -1.2
1,629,685 - BWI76_RS07690 0.86 -0.7
1,630,091 + BWI76_RS07695 0.11 -0.8
1,630,099 - BWI76_RS07695 0.11 -0.7
1,630,143 + BWI76_RS07695 0.13 -0.6
1,630,186 + +0.4
1,630,189 - BWI76_RS07695 0.15 -1.4
1,630,391 + BWI76_RS07695 0.24 -0.2
1,630,574 + BWI76_RS07695 0.33 -0.2
1,630,574 + BWI76_RS07695 0.33 -1.6
1,630,582 - BWI76_RS07695 0.33 -0.2
1,630,582 - BWI76_RS07695 0.33 -1.1
1,630,611 + BWI76_RS07695 0.34 -1.4
1,630,712 - BWI76_RS07695 0.39 +0.6

Or see this region's nucleotide sequence