Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07050

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07045 and BWI76_RS07050 are separated by 9 nucleotidesBWI76_RS07050 and BWI76_RS07055 are separated by 10 nucleotidesBWI76_RS07055 and BWI76_RS07060 are separated by 9 nucleotides BWI76_RS07045: BWI76_RS07045 - acyl-CoA synthetase FdrA, at 1,481,676 to 1,483,343 _RS07045 BWI76_RS07050: BWI76_RS07050 - putative cytoplasmic protein, at 1,483,353 to 1,484,612 _RS07050 BWI76_RS07055: BWI76_RS07055 - putative cytoplasmic protein, at 1,484,623 to 1,485,426 _RS07055 BWI76_RS07060: BWI76_RS07060 - carbamate kinase, at 1,485,436 to 1,486,329 _RS07060 Position (kb) 1483 1484 1485Strain fitness (log2 ratio) -2 -1 0 1 2at 1482.590 kb on + strand, within BWI76_RS07045at 1482.645 kb on + strand, within BWI76_RS07045at 1482.734 kb on + strand, within BWI76_RS07045at 1482.775 kb on - strand, within BWI76_RS07045at 1482.853 kb on + strand, within BWI76_RS07045at 1483.151 kb on + strand, within BWI76_RS07045at 1483.159 kb on - strand, within BWI76_RS07045at 1483.222 kb on - strandat 1483.222 kb on - strandat 1483.224 kb on + strandat 1483.381 kb on - strandat 1483.478 kb on + strandat 1483.517 kb on - strand, within BWI76_RS07050at 1483.523 kb on + strand, within BWI76_RS07050at 1483.523 kb on + strand, within BWI76_RS07050at 1483.615 kb on + strand, within BWI76_RS07050at 1483.623 kb on - strand, within BWI76_RS07050at 1483.709 kb on + strand, within BWI76_RS07050at 1483.889 kb on - strand, within BWI76_RS07050at 1483.924 kb on - strand, within BWI76_RS07050at 1483.930 kb on + strand, within BWI76_RS07050at 1484.028 kb on - strand, within BWI76_RS07050at 1484.054 kb on + strand, within BWI76_RS07050at 1484.115 kb on + strand, within BWI76_RS07050at 1484.194 kb on - strand, within BWI76_RS07050at 1484.211 kb on - strandat 1484.225 kb on - strand, within BWI76_RS07050at 1484.226 kb on - strand, within BWI76_RS07050at 1484.247 kb on - strand, within BWI76_RS07050at 1484.473 kb on + strand, within BWI76_RS07050at 1484.606 kb on + strandat 1484.693 kb on + strandat 1484.753 kb on + strand, within BWI76_RS07055at 1484.761 kb on - strand, within BWI76_RS07055at 1484.877 kb on + strand, within BWI76_RS07055at 1485.024 kb on - strand, within BWI76_RS07055at 1485.050 kb on + strand, within BWI76_RS07055at 1485.056 kb on + strand, within BWI76_RS07055at 1485.238 kb on + strand, within BWI76_RS07055at 1485.246 kb on - strand, within BWI76_RS07055at 1485.246 kb on - strand, within BWI76_RS07055at 1485.485 kb on + strandat 1485.605 kb on - strand, within BWI76_RS07060

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,482,590 + BWI76_RS07045 0.55 +0.9
1,482,645 + BWI76_RS07045 0.58 -0.9
1,482,734 + BWI76_RS07045 0.63 +1.7
1,482,775 - BWI76_RS07045 0.66 -0.7
1,482,853 + BWI76_RS07045 0.71 -0.7
1,483,151 + BWI76_RS07045 0.88 +0.8
1,483,159 - BWI76_RS07045 0.89 -0.7
1,483,222 - +0.9
1,483,222 - -0.8
1,483,224 + +0.4
1,483,381 - -0.6
1,483,478 + -0.4
1,483,517 - BWI76_RS07050 0.13 +1.9
1,483,523 + BWI76_RS07050 0.13 -1.2
1,483,523 + BWI76_RS07050 0.13 -1.1
1,483,615 + BWI76_RS07050 0.21 -0.0
1,483,623 - BWI76_RS07050 0.21 +0.2
1,483,709 + BWI76_RS07050 0.28 -1.2
1,483,889 - BWI76_RS07050 0.43 -1.1
1,483,924 - BWI76_RS07050 0.45 +1.8
1,483,930 + BWI76_RS07050 0.46 -1.3
1,484,028 - BWI76_RS07050 0.54 -0.4
1,484,054 + BWI76_RS07050 0.56 -2.0
1,484,115 + BWI76_RS07050 0.60 -0.5
1,484,194 - BWI76_RS07050 0.67 -1.8
1,484,211 - -0.0
1,484,225 - BWI76_RS07050 0.69 +0.2
1,484,226 - BWI76_RS07050 0.69 -0.9
1,484,247 - BWI76_RS07050 0.71 -0.1
1,484,473 + BWI76_RS07050 0.89 -1.6
1,484,606 + +0.2
1,484,693 + +0.4
1,484,753 + BWI76_RS07055 0.16 -1.6
1,484,761 - BWI76_RS07055 0.17 +0.3
1,484,877 + BWI76_RS07055 0.32 -1.0
1,485,024 - BWI76_RS07055 0.50 +0.4
1,485,050 + BWI76_RS07055 0.53 -1.7
1,485,056 + BWI76_RS07055 0.54 +0.7
1,485,238 + BWI76_RS07055 0.76 -0.0
1,485,246 - BWI76_RS07055 0.77 +1.5
1,485,246 - BWI76_RS07055 0.77 +0.1
1,485,485 + -0.3
1,485,605 - BWI76_RS07060 0.19 -0.1

Or see this region's nucleotide sequence