Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05985 and BWI76_RS05990 overlap by 1 nucleotides BWI76_RS05990 and BWI76_RS05995 are separated by 20 nucleotides
BWI76_RS05985: BWI76_RS05985 - branched-chain amino acid ABC transporter permease, at 1,255,492 to 1,256,541
_RS05985
BWI76_RS05990: BWI76_RS05990 - branched-chain amino acid ABC transporter permease, at 1,256,541 to 1,257,440
_RS05990
BWI76_RS05995: BWI76_RS05995 - branched-chain amino acid ABC transporter substrate-binding protein, at 1,257,461 to 1,258,597
_RS05995
Position (kb)
1256
1257
1258 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 1255.831 kb on + strand, within BWI76_RS05985 at 1256.049 kb on - strand, within BWI76_RS05985 at 1256.193 kb on + strand, within BWI76_RS05985 at 1256.366 kb on - strand, within BWI76_RS05985 at 1256.382 kb on - strand, within BWI76_RS05985 at 1256.441 kb on - strand at 1256.501 kb on - strand at 1256.713 kb on - strand, within BWI76_RS05990 at 1256.756 kb on + strand, within BWI76_RS05990 at 1256.775 kb on + strand, within BWI76_RS05990 at 1256.786 kb on + strand, within BWI76_RS05990 at 1256.809 kb on + strand, within BWI76_RS05990 at 1256.809 kb on + strand, within BWI76_RS05990 at 1256.889 kb on + strand, within BWI76_RS05990 at 1257.244 kb on - strand, within BWI76_RS05990 at 1257.336 kb on + strand, within BWI76_RS05990 at 1257.396 kb on - strand at 1257.524 kb on + strand at 1257.567 kb on + strand at 1257.635 kb on + strand, within BWI76_RS05995 at 1257.642 kb on - strand, within BWI76_RS05995 at 1257.960 kb on - strand, within BWI76_RS05995 at 1258.192 kb on - strand, within BWI76_RS05995 at 1258.345 kb on - strand, within BWI76_RS05995 at 1258.384 kb on + strand, within BWI76_RS05995 at 1258.390 kb on + strand, within BWI76_RS05995 at 1258.420 kb on + strand, within BWI76_RS05995 at 1258.435 kb on - strand, within BWI76_RS05995 at 1258.439 kb on + strand, within BWI76_RS05995
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 1,255,831 + BWI76_RS05985 0.32 -3.2 1,256,049 - BWI76_RS05985 0.53 -0.4 1,256,193 + BWI76_RS05985 0.67 -0.3 1,256,366 - BWI76_RS05985 0.83 -0.9 1,256,382 - BWI76_RS05985 0.85 -1.0 1,256,441 - -0.1 1,256,501 - +1.6 1,256,713 - BWI76_RS05990 0.19 +2.4 1,256,756 + BWI76_RS05990 0.24 -0.8 1,256,775 + BWI76_RS05990 0.26 +1.7 1,256,786 + BWI76_RS05990 0.27 -0.8 1,256,809 + BWI76_RS05990 0.30 -0.4 1,256,809 + BWI76_RS05990 0.30 +1.4 1,256,889 + BWI76_RS05990 0.39 +0.3 1,257,244 - BWI76_RS05990 0.78 +0.8 1,257,336 + BWI76_RS05990 0.88 -1.1 1,257,396 - +0.6 1,257,524 + -0.7 1,257,567 + -0.6 1,257,635 + BWI76_RS05995 0.15 +0.6 1,257,642 - BWI76_RS05995 0.16 +0.4 1,257,960 - BWI76_RS05995 0.44 +0.1 1,258,192 - BWI76_RS05995 0.64 +0.0 1,258,345 - BWI76_RS05995 0.78 -1.0 1,258,384 + BWI76_RS05995 0.81 +7.9 1,258,390 + BWI76_RS05995 0.82 +0.1 1,258,420 + BWI76_RS05995 0.84 -1.4 1,258,435 - BWI76_RS05995 0.86 -0.4 1,258,439 + BWI76_RS05995 0.86 -1.8
Or see this region's nucleotide sequence