Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04650 and BWI76_RS04655 are separated by 11 nucleotides BWI76_RS04655 and BWI76_RS04660 are separated by 10 nucleotides
BWI76_RS04650: BWI76_RS04650 - MFS transporter, at 968,531 to 969,745
_RS04650
BWI76_RS04655: BWI76_RS04655 - shikimate dehydrogenase, at 969,757 to 970,620
_RS04655
BWI76_RS04660: BWI76_RS04660 - 2,4-dienoyl-CoA reductase, at 970,631 to 972,664
_RS04660
Position (kb) 969
970
971 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 968.770 kb on - strand, within BWI76_RS04650 at 968.794 kb on - strand, within BWI76_RS04650 at 968.818 kb on - strand, within BWI76_RS04650 at 968.990 kb on - strand, within BWI76_RS04650 at 969.100 kb on + strand, within BWI76_RS04650 at 969.100 kb on + strand, within BWI76_RS04650 at 969.108 kb on - strand, within BWI76_RS04650 at 969.137 kb on - strand, within BWI76_RS04650 at 969.272 kb on + strand, within BWI76_RS04650 at 969.347 kb on - strand, within BWI76_RS04650 at 969.347 kb on - strand, within BWI76_RS04650 at 969.347 kb on - strand, within BWI76_RS04650 at 969.352 kb on + strand, within BWI76_RS04650 at 969.662 kb on - strand at 969.778 kb on - strand at 969.825 kb on + strand at 969.825 kb on + strand at 969.921 kb on + strand, within BWI76_RS04655 at 970.025 kb on - strand at 970.287 kb on - strand, within BWI76_RS04655 at 970.356 kb on + strand, within BWI76_RS04655 at 970.458 kb on - strand, within BWI76_RS04655 at 970.545 kb on - strand at 970.798 kb on + strand at 970.834 kb on + strand at 970.842 kb on - strand, within BWI76_RS04660 at 970.921 kb on + strand, within BWI76_RS04660 at 970.932 kb on + strand, within BWI76_RS04660 at 970.940 kb on - strand, within BWI76_RS04660 at 970.999 kb on + strand, within BWI76_RS04660 at 971.391 kb on - strand, within BWI76_RS04660 at 971.511 kb on - strand, within BWI76_RS04660 at 971.587 kb on - strand, within BWI76_RS04660
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 968,770 - BWI76_RS04650 0.20 +0.7 968,794 - BWI76_RS04650 0.22 -1.8 968,818 - BWI76_RS04650 0.24 -0.4 968,990 - BWI76_RS04650 0.38 +2.4 969,100 + BWI76_RS04650 0.47 +0.5 969,100 + BWI76_RS04650 0.47 +0.1 969,108 - BWI76_RS04650 0.47 -0.7 969,137 - BWI76_RS04650 0.50 -0.7 969,272 + BWI76_RS04650 0.61 +0.2 969,347 - BWI76_RS04650 0.67 -0.7 969,347 - BWI76_RS04650 0.67 -0.7 969,347 - BWI76_RS04650 0.67 +1.0 969,352 + BWI76_RS04650 0.68 -1.4 969,662 - +0.5 969,778 - -1.3 969,825 + -0.9 969,825 + -2.6 969,921 + BWI76_RS04655 0.19 -0.1 970,025 - +1.0 970,287 - BWI76_RS04655 0.61 -2.9 970,356 + BWI76_RS04655 0.69 -2.5 970,458 - BWI76_RS04655 0.81 -1.0 970,545 - -1.5 970,798 + -1.1 970,834 + +0.5 970,842 - BWI76_RS04660 0.10 +0.8 970,921 + BWI76_RS04660 0.14 +0.2 970,932 + BWI76_RS04660 0.15 -1.4 970,940 - BWI76_RS04660 0.15 -0.9 970,999 + BWI76_RS04660 0.18 -0.1 971,391 - BWI76_RS04660 0.37 +1.0 971,511 - BWI76_RS04660 0.43 -0.6 971,587 - BWI76_RS04660 0.47 +5.3
Or see this region's nucleotide sequence