Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22885

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS22880 and BWI76_RS22885 are separated by 149 nucleotidesBWI76_RS22885 and BWI76_RS22890 are separated by 163 nucleotides BWI76_RS22880: BWI76_RS22880 - L-serine ammonia-lyase, at 4,774,121 to 4,775,488 _RS22880 BWI76_RS22885: BWI76_RS22885 - aliphatic sulfonate ABC transporter substrate-binding protein, at 4,775,638 to 4,776,579 _RS22885 BWI76_RS22890: BWI76_RS22890 - 5,10-methylenetetrahydromethanopterin reductase, at 4,776,743 to 4,778,149 _RS22890 Position (kb) 4775 4776 4777Strain fitness (log2 ratio) -1 0 1at 4775.082 kb on + strand, within BWI76_RS22880at 4775.252 kb on + strand, within BWI76_RS22880at 4775.255 kb on - strand, within BWI76_RS22880at 4775.356 kb on - strandat 4775.824 kb on - strand, within BWI76_RS22885at 4775.934 kb on - strand, within BWI76_RS22885at 4775.944 kb on - strand, within BWI76_RS22885at 4776.081 kb on + strand, within BWI76_RS22885at 4776.086 kb on + strand, within BWI76_RS22885at 4776.117 kb on + strand, within BWI76_RS22885at 4776.171 kb on + strand, within BWI76_RS22885at 4776.249 kb on - strand, within BWI76_RS22885at 4776.256 kb on - strand, within BWI76_RS22885at 4776.266 kb on + strand, within BWI76_RS22885at 4776.266 kb on - strand, within BWI76_RS22885at 4776.266 kb on - strand, within BWI76_RS22885at 4776.267 kb on - strand, within BWI76_RS22885at 4776.459 kb on + strand, within BWI76_RS22885at 4776.551 kb on + strandat 4776.573 kb on + strandat 4776.987 kb on + strand, within BWI76_RS22890at 4776.987 kb on + strand, within BWI76_RS22890at 4777.188 kb on - strand, within BWI76_RS22890at 4777.243 kb on - strand, within BWI76_RS22890at 4777.487 kb on - strand, within BWI76_RS22890at 4777.569 kb on + strand, within BWI76_RS22890

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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4,775,082 + BWI76_RS22880 0.70 +0.2
4,775,252 + BWI76_RS22880 0.83 +1.6
4,775,255 - BWI76_RS22880 0.83 -0.1
4,775,356 - +0.0
4,775,824 - BWI76_RS22885 0.20 +0.6
4,775,934 - BWI76_RS22885 0.31 +1.3
4,775,944 - BWI76_RS22885 0.32 -0.5
4,776,081 + BWI76_RS22885 0.47 -0.1
4,776,086 + BWI76_RS22885 0.48 -1.3
4,776,117 + BWI76_RS22885 0.51 -0.2
4,776,171 + BWI76_RS22885 0.57 -0.3
4,776,249 - BWI76_RS22885 0.65 -0.5
4,776,256 - BWI76_RS22885 0.66 -0.3
4,776,266 + BWI76_RS22885 0.67 +0.1
4,776,266 - BWI76_RS22885 0.67 -0.1
4,776,266 - BWI76_RS22885 0.67 -1.0
4,776,267 - BWI76_RS22885 0.67 -0.2
4,776,459 + BWI76_RS22885 0.87 +0.3
4,776,551 + +0.6
4,776,573 + -0.8
4,776,987 + BWI76_RS22890 0.17 +0.1
4,776,987 + BWI76_RS22890 0.17 -0.1
4,777,188 - BWI76_RS22890 0.32 +0.4
4,777,243 - BWI76_RS22890 0.36 -0.2
4,777,487 - BWI76_RS22890 0.53 +0.5
4,777,569 + BWI76_RS22890 0.59 -0.7

Or see this region's nucleotide sequence