Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19580

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19570 and BWI76_RS19575 are separated by 8 nucleotidesBWI76_RS19575 and BWI76_RS19580 are separated by 8 nucleotidesBWI76_RS19580 and BWI76_RS19585 are separated by 24 nucleotides BWI76_RS19570: BWI76_RS19570 - 3-hydroxybenzoate 6-hydroxylase, at 4,091,793 to 4,092,986 _RS19570 BWI76_RS19575: BWI76_RS19575 - maleylacetoacetate isomerase, at 4,092,995 to 4,093,639 _RS19575 BWI76_RS19580: BWI76_RS19580 - FAA-hydrolase, at 4,093,648 to 4,094,346 _RS19580 BWI76_RS19585: BWI76_RS19585 - gentisate 1,2-dioxygenase, at 4,094,371 to 4,095,408 _RS19585 Position (kb) 4093 4094 4095Strain fitness (log2 ratio) -1 0 1 2 3at 4092.705 kb on + strand, within BWI76_RS19570at 4092.977 kb on + strandat 4093.080 kb on - strand, within BWI76_RS19575at 4093.158 kb on - strand, within BWI76_RS19575at 4093.886 kb on - strand, within BWI76_RS19580at 4093.996 kb on + strand, within BWI76_RS19580at 4094.384 kb on + strandat 4094.384 kb on + strandat 4094.553 kb on - strand, within BWI76_RS19585at 4094.733 kb on - strand, within BWI76_RS19585at 4094.905 kb on - strand, within BWI76_RS19585

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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4,092,705 + BWI76_RS19570 0.76 +0.0
4,092,977 + -1.0
4,093,080 - BWI76_RS19575 0.13 +0.1
4,093,158 - BWI76_RS19575 0.25 -0.3
4,093,886 - BWI76_RS19580 0.34 -0.3
4,093,996 + BWI76_RS19580 0.50 -0.3
4,094,384 + +0.2
4,094,384 + +1.0
4,094,553 - BWI76_RS19585 0.18 +1.2
4,094,733 - BWI76_RS19585 0.35 -1.5
4,094,905 - BWI76_RS19585 0.51 +3.0

Or see this region's nucleotide sequence