Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18515 and BWI76_RS18520 overlap by 4 nucleotides BWI76_RS18520 and BWI76_RS18525 are separated by 106 nucleotides BWI76_RS18525 and BWI76_RS18530 are separated by 227 nucleotides
BWI76_RS18515: BWI76_RS18515 - multidrug transporter AcrB, at 3,840,487 to 3,843,549
_RS18515
BWI76_RS18520: BWI76_RS18520 - hypothetical protein, at 3,843,546 to 3,844,511
_RS18520
BWI76_RS18525: BWI76_RS18525 - phospholipid:lipid A palmitoyltransferase, at 3,844,618 to 3,845,193
_RS18525
BWI76_RS18530: BWI76_RS18530 - hypothetical protein, at 3,845,421 to 3,846,353
_RS18530
Position (kb)
3843
3844
3845 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7 at 3842.805 kb on + strand, within BWI76_RS18515 at 3842.965 kb on + strand, within BWI76_RS18515 at 3843.543 kb on + strand at 3843.726 kb on - strand at 3843.820 kb on + strand, within BWI76_RS18520 at 3843.848 kb on + strand, within BWI76_RS18520 at 3843.902 kb on - strand, within BWI76_RS18520 at 3843.909 kb on + strand, within BWI76_RS18520 at 3843.909 kb on + strand, within BWI76_RS18520 at 3843.939 kb on + strand, within BWI76_RS18520 at 3844.028 kb on - strand, within BWI76_RS18520 at 3844.028 kb on - strand, within BWI76_RS18520 at 3844.075 kb on - strand, within BWI76_RS18520 at 3844.105 kb on - strand, within BWI76_RS18520 at 3844.115 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.201 kb on - strand at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.259 kb on + strand, within BWI76_RS18520 at 3844.259 kb on + strand, within BWI76_RS18520 at 3844.387 kb on + strand, within BWI76_RS18520 at 3844.395 kb on - strand, within BWI76_RS18520 at 3844.395 kb on - strand, within BWI76_RS18520 at 3844.544 kb on - strand at 3844.546 kb on + strand at 3844.687 kb on + strand, within BWI76_RS18525 at 3844.880 kb on + strand, within BWI76_RS18525 at 3844.880 kb on + strand, within BWI76_RS18525 at 3844.888 kb on - strand, within BWI76_RS18525 at 3844.888 kb on - strand, within BWI76_RS18525 at 3844.888 kb on - strand, within BWI76_RS18525 at 3844.888 kb on - strand, within BWI76_RS18525 at 3844.898 kb on - strand, within BWI76_RS18525 at 3844.907 kb on + strand, within BWI76_RS18525 at 3844.915 kb on - strand, within BWI76_RS18525 at 3844.923 kb on + strand, within BWI76_RS18525 at 3845.060 kb on - strand, within BWI76_RS18525 at 3845.060 kb on - strand, within BWI76_RS18525 at 3845.086 kb on + strand, within BWI76_RS18525 at 3845.183 kb on - strand at 3845.195 kb on + strand at 3845.203 kb on - strand at 3845.203 kb on - strand at 3845.203 kb on - strand at 3845.203 kb on - strand at 3845.203 kb on - strand at 3845.286 kb on + strand at 3845.287 kb on + strand at 3845.294 kb on - strand at 3845.322 kb on + strand at 3845.322 kb on + strand at 3845.322 kb on + strand at 3845.322 kb on + strand at 3845.322 kb on + strand at 3845.328 kb on - strand at 3845.330 kb on - strand at 3845.330 kb on - strand at 3845.330 kb on - strand at 3845.330 kb on - strand at 3845.330 kb on - strand at 3845.330 kb on - strand at 3845.330 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 3,842,805 + BWI76_RS18515 0.76 +2.0 3,842,965 + BWI76_RS18515 0.81 -0.3 3,843,543 + -0.9 3,843,726 - -0.2 3,843,820 + BWI76_RS18520 0.28 -0.2 3,843,848 + BWI76_RS18520 0.31 +3.4 3,843,902 - BWI76_RS18520 0.37 -0.6 3,843,909 + BWI76_RS18520 0.38 -0.2 3,843,909 + BWI76_RS18520 0.38 -0.1 3,843,939 + BWI76_RS18520 0.41 -1.8 3,844,028 - BWI76_RS18520 0.50 -1.0 3,844,028 - BWI76_RS18520 0.50 -0.1 3,844,075 - BWI76_RS18520 0.55 +0.2 3,844,105 - BWI76_RS18520 0.58 -0.4 3,844,115 + BWI76_RS18520 0.59 -0.8 3,844,193 + BWI76_RS18520 0.67 +0.3 3,844,193 + BWI76_RS18520 0.67 +0.1 3,844,193 + BWI76_RS18520 0.67 -1.5 3,844,193 + BWI76_RS18520 0.67 -0.2 3,844,193 + BWI76_RS18520 0.67 +0.4 3,844,193 + BWI76_RS18520 0.67 -0.5 3,844,193 + BWI76_RS18520 0.67 -0.1 3,844,193 + BWI76_RS18520 0.67 +1.7 3,844,193 + BWI76_RS18520 0.67 -1.0 3,844,193 + BWI76_RS18520 0.67 +0.3 3,844,193 + BWI76_RS18520 0.67 +0.4 3,844,193 + BWI76_RS18520 0.67 +0.7 3,844,193 + BWI76_RS18520 0.67 +1.3 3,844,193 + BWI76_RS18520 0.67 +0.9 3,844,201 - BWI76_RS18520 0.68 +0.5 3,844,201 - BWI76_RS18520 0.68 -1.8 3,844,201 - BWI76_RS18520 0.68 +0.7 3,844,201 - BWI76_RS18520 0.68 +0.2 3,844,201 - +0.2 3,844,201 - BWI76_RS18520 0.68 +1.1 3,844,201 - BWI76_RS18520 0.68 -0.3 3,844,201 - BWI76_RS18520 0.68 +0.6 3,844,201 - BWI76_RS18520 0.68 +0.7 3,844,201 - BWI76_RS18520 0.68 +0.6 3,844,201 - BWI76_RS18520 0.68 +0.5 3,844,201 - BWI76_RS18520 0.68 -0.7 3,844,259 + BWI76_RS18520 0.74 -0.7 3,844,259 + BWI76_RS18520 0.74 +5.0 3,844,387 + BWI76_RS18520 0.87 +0.5 3,844,395 - BWI76_RS18520 0.88 +0.6 3,844,395 - BWI76_RS18520 0.88 -0.2 3,844,544 - +0.2 3,844,546 + -1.5 3,844,687 + BWI76_RS18525 0.12 +0.5 3,844,880 + BWI76_RS18525 0.45 +7.4 3,844,880 + BWI76_RS18525 0.45 +0.8 3,844,888 - BWI76_RS18525 0.47 -1.6 3,844,888 - BWI76_RS18525 0.47 -0.2 3,844,888 - BWI76_RS18525 0.47 +0.1 3,844,888 - BWI76_RS18525 0.47 +0.2 3,844,898 - BWI76_RS18525 0.49 +0.8 3,844,907 + BWI76_RS18525 0.50 +1.6 3,844,915 - BWI76_RS18525 0.52 -0.8 3,844,923 + BWI76_RS18525 0.53 -0.6 3,845,060 - BWI76_RS18525 0.77 +0.3 3,845,060 - BWI76_RS18525 0.77 +0.2 3,845,086 + BWI76_RS18525 0.81 -0.3 3,845,183 - +2.3 3,845,195 + -0.7 3,845,203 - -0.0 3,845,203 - +0.3 3,845,203 - +3.4 3,845,203 - -0.5 3,845,203 - +2.1 3,845,286 + -1.3 3,845,287 + +0.3 3,845,294 - -0.1 3,845,322 + +0.0 3,845,322 + -0.4 3,845,322 + -1.6 3,845,322 + -0.4 3,845,322 + -0.1 3,845,328 - +0.6 3,845,330 - -0.7 3,845,330 - -1.0 3,845,330 - -0.3 3,845,330 - -0.4 3,845,330 - +0.1 3,845,330 - -0.6 3,845,330 - +1.2
Or see this region's nucleotide sequence