Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16855

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16850 and BWI76_RS16855 overlap by 4 nucleotidesBWI76_RS16855 and BWI76_RS16860 are separated by 11 nucleotides BWI76_RS16850: BWI76_RS16850 - ABC transporter periplasmic substrate-binding protein, at 3,494,332 to 3,495,369 _RS16850 BWI76_RS16855: BWI76_RS16855 - putative ABC transporter periplasmic solute-binding protein, at 3,495,366 to 3,496,340 _RS16855 BWI76_RS16860: BWI76_RS16860 - acyl-CoA dehydrogenase, at 3,496,352 to 3,497,440 _RS16860 Position (kb) 3495 3496 3497Strain fitness (log2 ratio) -1 0 1 2at 3494.575 kb on - strand, within BWI76_RS16850at 3494.662 kb on + strand, within BWI76_RS16850at 3494.662 kb on + strand, within BWI76_RS16850at 3495.015 kb on + strand, within BWI76_RS16850at 3495.367 kb on - strandat 3495.387 kb on + strandat 3495.787 kb on + strand, within BWI76_RS16855at 3496.282 kb on - strandat 3496.429 kb on - strandat 3496.666 kb on + strand, within BWI76_RS16860at 3496.720 kb on - strand, within BWI76_RS16860

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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3,494,575 - BWI76_RS16850 0.23 -0.3
3,494,662 + BWI76_RS16850 0.32 +1.3
3,494,662 + BWI76_RS16850 0.32 -0.9
3,495,015 + BWI76_RS16850 0.66 +0.8
3,495,367 - +0.8
3,495,387 + -0.0
3,495,787 + BWI76_RS16855 0.43 +2.4
3,496,282 - -0.4
3,496,429 - -0.3
3,496,666 + BWI76_RS16860 0.29 +0.0
3,496,720 - BWI76_RS16860 0.34 +0.5

Or see this region's nucleotide sequence