Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16840 and BWI76_RS16845 overlap by 7 nucleotides BWI76_RS16845 and BWI76_RS16850 overlap by 20 nucleotides BWI76_RS16850 and BWI76_RS16855 overlap by 4 nucleotides BWI76_RS16855 and BWI76_RS16860 are separated by 11 nucleotides
BWI76_RS16840: BWI76_RS16840 - ABC transporter, at 3,492,574 to 3,493,362
_RS16840
BWI76_RS16845: BWI76_RS16845 - ABC transporter permease, at 3,493,356 to 3,494,351
_RS16845
BWI76_RS16850: BWI76_RS16850 - ABC transporter periplasmic substrate-binding protein, at 3,494,332 to 3,495,369
_RS16850
BWI76_RS16855: BWI76_RS16855 - putative ABC transporter periplasmic solute-binding protein, at 3,495,366 to 3,496,340
_RS16855
BWI76_RS16860: BWI76_RS16860 - acyl-CoA dehydrogenase, at 3,496,352 to 3,497,440
_RS16860
Position (kb)
3494
3495
3496 Strain fitness (log2 ratio)
-1
0
1
2 at 3493.403 kb on + strand at 3493.432 kb on - strand at 3493.441 kb on + strand at 3493.480 kb on + strand, within BWI76_RS16845 at 3493.493 kb on - strand, within BWI76_RS16845 at 3493.651 kb on - strand, within BWI76_RS16845 at 3493.715 kb on - strand, within BWI76_RS16845 at 3493.903 kb on - strand, within BWI76_RS16845 at 3493.919 kb on + strand, within BWI76_RS16845 at 3494.251 kb on + strand, within BWI76_RS16845 at 3494.575 kb on - strand, within BWI76_RS16850 at 3494.662 kb on + strand, within BWI76_RS16850 at 3494.662 kb on + strand, within BWI76_RS16850 at 3495.015 kb on + strand, within BWI76_RS16850 at 3495.367 kb on - strand at 3495.387 kb on + strand at 3495.787 kb on + strand, within BWI76_RS16855 at 3496.282 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 3,493,403 + +1.8 3,493,432 - -0.8 3,493,441 + -0.3 3,493,480 + BWI76_RS16845 0.12 +0.1 3,493,493 - BWI76_RS16845 0.14 -1.1 3,493,651 - BWI76_RS16845 0.30 +0.0 3,493,715 - BWI76_RS16845 0.36 -0.8 3,493,903 - BWI76_RS16845 0.55 -0.6 3,493,919 + BWI76_RS16845 0.57 +0.2 3,494,251 + BWI76_RS16845 0.90 +0.6 3,494,575 - BWI76_RS16850 0.23 -0.3 3,494,662 + BWI76_RS16850 0.32 +1.3 3,494,662 + BWI76_RS16850 0.32 -0.9 3,495,015 + BWI76_RS16850 0.66 +0.8 3,495,367 - +0.8 3,495,387 + -0.0 3,495,787 + BWI76_RS16855 0.43 +2.4 3,496,282 - -0.4
Or see this region's nucleotide sequence