Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14575

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14565 and BWI76_RS14570 are separated by 28 nucleotidesBWI76_RS14570 and BWI76_RS14575 are separated by 88 nucleotidesBWI76_RS14575 and BWI76_RS14580 overlap by 1 nucleotidesBWI76_RS14580 and BWI76_RS14585 are separated by 26 nucleotides BWI76_RS14565: BWI76_RS14565 - cysteine hydrolase, at 3,058,393 to 3,058,926 _RS14565 BWI76_RS14570: BWI76_RS14570 - hypothetical protein, at 3,058,955 to 3,059,515 _RS14570 BWI76_RS14575: BWI76_RS14575 - TENA/THI-4 family protein, at 3,059,604 to 3,060,248 _RS14575 BWI76_RS14580: BWI76_RS14580 - hypothetical protein, at 3,060,248 to 3,061,093 _RS14580 BWI76_RS14585: BWI76_RS14585 - ribokinase, at 3,061,120 to 3,061,992 _RS14585 Position (kb) 3059 3060 3061Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 3059.281 kb on + strand, within BWI76_RS14570at 3059.324 kb on + strand, within BWI76_RS14570at 3059.353 kb on - strand, within BWI76_RS14570at 3059.370 kb on - strand, within BWI76_RS14570at 3059.548 kb on + strandat 3059.548 kb on + strandat 3059.651 kb on - strandat 3059.768 kb on + strand, within BWI76_RS14575at 3059.982 kb on - strand, within BWI76_RS14575at 3060.294 kb on + strandat 3060.335 kb on - strand, within BWI76_RS14580at 3060.403 kb on + strand, within BWI76_RS14580at 3060.411 kb on - strand, within BWI76_RS14580at 3060.477 kb on + strand, within BWI76_RS14580at 3060.737 kb on + strandat 3060.745 kb on - strand, within BWI76_RS14580at 3060.772 kb on + strand, within BWI76_RS14580at 3060.783 kb on - strand, within BWI76_RS14580at 3060.790 kb on - strand, within BWI76_RS14580at 3060.790 kb on - strand, within BWI76_RS14580at 3060.852 kb on + strandat 3060.872 kb on - strand, within BWI76_RS14580at 3060.875 kb on + strand, within BWI76_RS14580at 3061.004 kb on - strand, within BWI76_RS14580at 3061.110 kb on + strandat 3061.110 kb on + strandat 3061.110 kb on + strandat 3061.118 kb on - strandat 3061.118 kb on - strandat 3061.118 kb on - strandat 3061.118 kb on - strandat 3061.118 kb on - strandat 3061.213 kb on - strand, within BWI76_RS14585

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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3,059,281 + BWI76_RS14570 0.58 -0.3
3,059,324 + BWI76_RS14570 0.66 +2.7
3,059,353 - BWI76_RS14570 0.71 -0.3
3,059,370 - BWI76_RS14570 0.74 -0.1
3,059,548 + +0.2
3,059,548 + +1.3
3,059,651 - -0.6
3,059,768 + BWI76_RS14575 0.25 -0.6
3,059,982 - BWI76_RS14575 0.59 -0.6
3,060,294 + +0.1
3,060,335 - BWI76_RS14580 0.10 -0.6
3,060,403 + BWI76_RS14580 0.18 -1.4
3,060,411 - BWI76_RS14580 0.19 +0.1
3,060,477 + BWI76_RS14580 0.27 +0.4
3,060,737 + +5.9
3,060,745 - BWI76_RS14580 0.59 +0.8
3,060,772 + BWI76_RS14580 0.62 -0.6
3,060,783 - BWI76_RS14580 0.63 +3.8
3,060,790 - BWI76_RS14580 0.64 -0.6
3,060,790 - BWI76_RS14580 0.64 -2.4
3,060,852 + -0.6
3,060,872 - BWI76_RS14580 0.74 +2.6
3,060,875 + BWI76_RS14580 0.74 -0.8
3,061,004 - BWI76_RS14580 0.89 +2.1
3,061,110 + +0.4
3,061,110 + -0.6
3,061,110 + +0.0
3,061,118 - -0.0
3,061,118 - -0.8
3,061,118 - +1.3
3,061,118 - +2.0
3,061,118 - +0.2
3,061,213 - BWI76_RS14585 0.11 +1.5

Or see this region's nucleotide sequence