Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14545

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14540 and BWI76_RS14545 overlap by 4 nucleotidesBWI76_RS14545 and BWI76_RS14550 are separated by 3 nucleotides BWI76_RS14540: BWI76_RS14540 - yersiniabactin biosynthetic protein YbtU, at 3,051,676 to 3,052,773 _RS14540 BWI76_RS14545: BWI76_RS14545 - thioesterase, at 3,052,770 to 3,053,573 _RS14545 BWI76_RS14550: BWI76_RS14550 - 2,3-dihydroxybenzoate-AMP ligase, at 3,053,577 to 3,055,154 _RS14550 Position (kb) 3052 3053 3054Strain fitness (log2 ratio) -1 0 1 2 3at 3051.848 kb on + strand, within BWI76_RS14540at 3052.055 kb on + strand, within BWI76_RS14540at 3052.411 kb on + strand, within BWI76_RS14540at 3052.830 kb on + strandat 3052.914 kb on + strand, within BWI76_RS14545at 3052.948 kb on + strand, within BWI76_RS14545at 3053.344 kb on + strand, within BWI76_RS14545at 3053.384 kb on - strand, within BWI76_RS14545at 3053.562 kb on + strandat 3054.132 kb on - strand, within BWI76_RS14550at 3054.161 kb on - strand, within BWI76_RS14550at 3054.198 kb on + strand, within BWI76_RS14550at 3054.216 kb on - strand, within BWI76_RS14550at 3054.294 kb on - strand, within BWI76_RS14550at 3054.327 kb on - strand, within BWI76_RS14550at 3054.409 kb on - strand, within BWI76_RS14550at 3054.475 kb on + strand, within BWI76_RS14550

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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3,051,848 + BWI76_RS14540 0.16 +0.4
3,052,055 + BWI76_RS14540 0.35 -0.1
3,052,411 + BWI76_RS14540 0.67 +0.8
3,052,830 + -0.7
3,052,914 + BWI76_RS14545 0.18 -0.4
3,052,948 + BWI76_RS14545 0.22 +0.3
3,053,344 + BWI76_RS14545 0.71 +3.1
3,053,384 - BWI76_RS14545 0.76 -0.4
3,053,562 + -0.8
3,054,132 - BWI76_RS14550 0.35 -1.5
3,054,161 - BWI76_RS14550 0.37 +0.1
3,054,198 + BWI76_RS14550 0.39 -0.1
3,054,216 - BWI76_RS14550 0.40 -1.1
3,054,294 - BWI76_RS14550 0.45 -0.7
3,054,327 - BWI76_RS14550 0.48 -0.4
3,054,409 - BWI76_RS14550 0.53 +0.3
3,054,475 + BWI76_RS14550 0.57 -0.5

Or see this region's nucleotide sequence