Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07675 and BWI76_RS07680 are separated by 364 nucleotides BWI76_RS07680 and BWI76_RS07685 overlap by 8 nucleotides BWI76_RS07685 and BWI76_RS07690 are separated by 53 nucleotides
BWI76_RS07675: BWI76_RS07675 - DeoR family transcriptional regulator, at 1,626,024 to 1,626,974
_RS07675
BWI76_RS07680: BWI76_RS07680 - transketolase, at 1,627,339 to 1,628,169
_RS07680
BWI76_RS07685: BWI76_RS07685 - transketolase, at 1,628,162 to 1,629,097
_RS07685
BWI76_RS07690: BWI76_RS07690 - enterochelin synthetase component D, at 1,629,151 to 1,629,774
_RS07690
Position (kb)
1627
1628
1629 Strain fitness (log2 ratio)
-2
-1
0
1 at 1626.433 kb on - strand, within BWI76_RS07675 at 1626.445 kb on - strand, within BWI76_RS07675 at 1626.746 kb on + strand, within BWI76_RS07675 at 1626.824 kb on - strand, within BWI76_RS07675 at 1626.905 kb on + strand at 1626.927 kb on - strand at 1627.011 kb on - strand at 1627.181 kb on - strand at 1627.204 kb on + strand at 1627.251 kb on - strand at 1627.388 kb on - strand at 1627.482 kb on + strand, within BWI76_RS07680 at 1627.564 kb on - strand, within BWI76_RS07680 at 1627.817 kb on - strand, within BWI76_RS07680 at 1628.179 kb on + strand at 1628.630 kb on - strand, within BWI76_RS07685 at 1629.163 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 1,626,433 - BWI76_RS07675 0.43 -1.8 1,626,445 - BWI76_RS07675 0.44 -2.0 1,626,746 + BWI76_RS07675 0.76 -2.2 1,626,824 - BWI76_RS07675 0.84 -0.8 1,626,905 + -0.2 1,626,927 - -0.9 1,627,011 - -0.1 1,627,181 - -0.0 1,627,204 + -1.4 1,627,251 - -0.4 1,627,388 - +1.2 1,627,482 + BWI76_RS07680 0.17 -1.5 1,627,564 - BWI76_RS07680 0.27 -1.2 1,627,817 - BWI76_RS07680 0.58 -1.0 1,628,179 + -0.6 1,628,630 - BWI76_RS07685 0.50 +0.4 1,629,163 + -0.6
Or see this region's nucleotide sequence