Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05865

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05860 and BWI76_RS05865 are separated by 222 nucleotidesBWI76_RS05865 and BWI76_RS05870 overlap by 4 nucleotidesBWI76_RS05870 and BWI76_RS05875 are separated by 23 nucleotides BWI76_RS05860: BWI76_RS05860 - alkanesulfonates-binding protein, at 1,230,772 to 1,231,839 _RS05860 BWI76_RS05865: BWI76_RS05865 - ABC transporter permease, at 1,232,062 to 1,233,630 _RS05865 BWI76_RS05870: BWI76_RS05870 - ABC transporter, at 1,233,627 to 1,234,370 _RS05870 BWI76_RS05875: BWI76_RS05875 - hypothetical protein, at 1,234,394 to 1,236,181 _RS05875 Position (kb) 1232 1233 1234Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1231.329 kb on + strand, within BWI76_RS05860at 1231.517 kb on + strand, within BWI76_RS05860at 1231.632 kb on + strand, within BWI76_RS05860at 1232.345 kb on + strand, within BWI76_RS05865at 1232.624 kb on + strand, within BWI76_RS05865at 1232.639 kb on + strand, within BWI76_RS05865at 1232.655 kb on + strand, within BWI76_RS05865at 1232.785 kb on - strand, within BWI76_RS05865at 1232.964 kb on + strand, within BWI76_RS05865at 1233.062 kb on - strand, within BWI76_RS05865at 1233.101 kb on - strand, within BWI76_RS05865at 1233.143 kb on + strand, within BWI76_RS05865at 1233.417 kb on + strand, within BWI76_RS05865at 1233.562 kb on + strandat 1233.574 kb on + strandat 1233.575 kb on - strandat 1233.624 kb on + strandat 1233.624 kb on + strandat 1233.642 kb on - strandat 1233.680 kb on + strandat 1233.707 kb on + strand, within BWI76_RS05870at 1233.760 kb on + strand, within BWI76_RS05870at 1234.282 kb on + strand, within BWI76_RS05870at 1234.295 kb on - strand, within BWI76_RS05870at 1234.458 kb on + strandat 1234.493 kb on + strandat 1234.530 kb on + strandat 1234.586 kb on - strand, within BWI76_RS05875

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,231,329 + BWI76_RS05860 0.52 -0.3
1,231,517 + BWI76_RS05860 0.70 +0.0
1,231,632 + BWI76_RS05860 0.81 -0.1
1,232,345 + BWI76_RS05865 0.18 -1.8
1,232,624 + BWI76_RS05865 0.36 -0.5
1,232,639 + BWI76_RS05865 0.37 -1.2
1,232,655 + BWI76_RS05865 0.38 -1.1
1,232,785 - BWI76_RS05865 0.46 +3.6
1,232,964 + BWI76_RS05865 0.57 +2.4
1,233,062 - BWI76_RS05865 0.64 +0.9
1,233,101 - BWI76_RS05865 0.66 +0.4
1,233,143 + BWI76_RS05865 0.69 -0.2
1,233,417 + BWI76_RS05865 0.86 -0.1
1,233,562 + -1.7
1,233,574 + -0.7
1,233,575 - -0.2
1,233,624 + +3.5
1,233,624 + -0.1
1,233,642 - -2.2
1,233,680 + -0.2
1,233,707 + BWI76_RS05870 0.11 -0.4
1,233,760 + BWI76_RS05870 0.18 -0.7
1,234,282 + BWI76_RS05870 0.88 -0.0
1,234,295 - BWI76_RS05870 0.90 +0.2
1,234,458 + -0.8
1,234,493 + +0.1
1,234,530 + -0.1
1,234,586 - BWI76_RS05875 0.11 -1.1

Or see this region's nucleotide sequence