Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05860

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05855 and BWI76_RS05860 overlap by 4 nucleotidesBWI76_RS05860 and BWI76_RS05865 are separated by 222 nucleotides BWI76_RS05855: BWI76_RS05855 - LysR family transcriptional regulator, at 1,229,831 to 1,230,775 _RS05855 BWI76_RS05860: BWI76_RS05860 - alkanesulfonates-binding protein, at 1,230,772 to 1,231,839 _RS05860 BWI76_RS05865: BWI76_RS05865 - ABC transporter permease, at 1,232,062 to 1,233,630 _RS05865 Position (kb) 1230 1231 1232Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1229.776 kb on - strandat 1229.786 kb on - strandat 1229.805 kb on + strandat 1229.813 kb on - strandat 1229.852 kb on - strandat 1229.859 kb on + strandat 1230.003 kb on + strand, within BWI76_RS05855at 1230.026 kb on - strand, within BWI76_RS05855at 1230.060 kb on + strand, within BWI76_RS05855at 1230.159 kb on - strand, within BWI76_RS05855at 1230.247 kb on - strand, within BWI76_RS05855at 1230.253 kb on + strand, within BWI76_RS05855at 1230.261 kb on - strand, within BWI76_RS05855at 1230.393 kb on + strand, within BWI76_RS05855at 1230.397 kb on - strand, within BWI76_RS05855at 1230.476 kb on + strand, within BWI76_RS05855at 1230.530 kb on + strand, within BWI76_RS05855at 1230.535 kb on + strand, within BWI76_RS05855at 1230.586 kb on - strand, within BWI76_RS05855at 1230.911 kb on + strand, within BWI76_RS05860at 1231.329 kb on + strand, within BWI76_RS05860at 1231.517 kb on + strand, within BWI76_RS05860at 1231.632 kb on + strand, within BWI76_RS05860at 1232.345 kb on + strand, within BWI76_RS05865at 1232.624 kb on + strand, within BWI76_RS05865at 1232.639 kb on + strand, within BWI76_RS05865at 1232.655 kb on + strand, within BWI76_RS05865at 1232.785 kb on - strand, within BWI76_RS05865

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,229,776 - -0.4
1,229,786 - -0.7
1,229,805 + -0.2
1,229,813 - +1.1
1,229,852 - -0.0
1,229,859 + +0.4
1,230,003 + BWI76_RS05855 0.18 -0.1
1,230,026 - BWI76_RS05855 0.21 -0.3
1,230,060 + BWI76_RS05855 0.24 -0.3
1,230,159 - BWI76_RS05855 0.35 +0.5
1,230,247 - BWI76_RS05855 0.44 +0.7
1,230,253 + BWI76_RS05855 0.45 +0.6
1,230,261 - BWI76_RS05855 0.46 +0.2
1,230,393 + BWI76_RS05855 0.59 -1.3
1,230,397 - BWI76_RS05855 0.60 +1.5
1,230,476 + BWI76_RS05855 0.68 -0.5
1,230,530 + BWI76_RS05855 0.74 -1.0
1,230,535 + BWI76_RS05855 0.74 +0.9
1,230,586 - BWI76_RS05855 0.80 +0.7
1,230,911 + BWI76_RS05860 0.13 -2.3
1,231,329 + BWI76_RS05860 0.52 -0.3
1,231,517 + BWI76_RS05860 0.70 +0.0
1,231,632 + BWI76_RS05860 0.81 -0.1
1,232,345 + BWI76_RS05865 0.18 -1.8
1,232,624 + BWI76_RS05865 0.36 -0.5
1,232,639 + BWI76_RS05865 0.37 -1.2
1,232,655 + BWI76_RS05865 0.38 -1.1
1,232,785 - BWI76_RS05865 0.46 +3.6

Or see this region's nucleotide sequence