Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS03575

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS03570 and BWI76_RS03575 are separated by 56 nucleotidesBWI76_RS03575 and BWI76_RS03580 are separated by 25 nucleotides BWI76_RS03570: BWI76_RS03570 - choline TMA-lyase-activating enzyme, at 738,456 to 739,397 _RS03570 BWI76_RS03575: BWI76_RS03575 - choline trimethylamine-lyase, at 739,454 to 742,840 _RS03575 BWI76_RS03580: BWI76_RS03580 - iron-containing alcohol dehydrogenase, at 742,866 to 744,008 _RS03580 Position (kb) 739 740 741 742 743Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3 4 5at 738.513 kb on + strandat 738.513 kb on + strandat 738.513 kb on + strandat 738.513 kb on + strandat 738.521 kb on - strandat 738.553 kb on + strand, within BWI76_RS03570at 738.553 kb on + strand, within BWI76_RS03570at 738.561 kb on - strand, within BWI76_RS03570at 738.561 kb on - strand, within BWI76_RS03570at 738.592 kb on + strand, within BWI76_RS03570at 738.596 kb on + strand, within BWI76_RS03570at 738.604 kb on - strand, within BWI76_RS03570at 738.676 kb on + strand, within BWI76_RS03570at 738.697 kb on - strandat 738.744 kb on - strand, within BWI76_RS03570at 738.748 kb on + strand, within BWI76_RS03570at 738.757 kb on - strand, within BWI76_RS03570at 738.757 kb on - strand, within BWI76_RS03570at 738.801 kb on - strand, within BWI76_RS03570at 738.846 kb on - strand, within BWI76_RS03570at 738.846 kb on - strand, within BWI76_RS03570at 738.875 kb on + strand, within BWI76_RS03570at 738.880 kb on + strand, within BWI76_RS03570at 738.886 kb on - strand, within BWI76_RS03570at 738.904 kb on + strand, within BWI76_RS03570at 738.904 kb on + strand, within BWI76_RS03570at 738.909 kb on - strand, within BWI76_RS03570at 738.912 kb on - strand, within BWI76_RS03570at 738.912 kb on - strand, within BWI76_RS03570at 738.912 kb on - strand, within BWI76_RS03570at 738.912 kb on - strand, within BWI76_RS03570at 738.945 kb on + strand, within BWI76_RS03570at 738.962 kb on + strand, within BWI76_RS03570at 738.962 kb on + strand, within BWI76_RS03570at 739.028 kb on - strand, within BWI76_RS03570at 739.043 kb on - strand, within BWI76_RS03570at 739.066 kb on - strand, within BWI76_RS03570at 739.098 kb on - strand, within BWI76_RS03570at 739.098 kb on - strand, within BWI76_RS03570at 739.098 kb on - strand, within BWI76_RS03570at 739.099 kb on + strand, within BWI76_RS03570at 739.113 kb on - strand, within BWI76_RS03570at 739.195 kb on - strand, within BWI76_RS03570at 739.199 kb on + strand, within BWI76_RS03570at 739.207 kb on - strand, within BWI76_RS03570at 739.207 kb on - strand, within BWI76_RS03570at 739.207 kb on - strand, within BWI76_RS03570at 739.207 kb on - strand, within BWI76_RS03570at 739.207 kb on - strand, within BWI76_RS03570at 739.207 kb on - strand, within BWI76_RS03570at 739.207 kb on - strand, within BWI76_RS03570at 739.233 kb on - strand, within BWI76_RS03570at 739.233 kb on - strand, within BWI76_RS03570at 739.246 kb on + strand, within BWI76_RS03570at 739.267 kb on + strand, within BWI76_RS03570at 739.268 kb on - strand, within BWI76_RS03570at 739.275 kb on - strand, within BWI76_RS03570at 739.275 kb on - strand, within BWI76_RS03570at 739.275 kb on - strand, within BWI76_RS03570at 739.275 kb on - strand, within BWI76_RS03570at 739.275 kb on - strand, within BWI76_RS03570at 739.417 kb on + strandat 739.421 kb on + strandat 739.421 kb on + strandat 739.426 kb on + strandat 739.426 kb on + strandat 739.426 kb on + strandat 739.429 kb on - strandat 739.434 kb on - strandat 739.434 kb on - strandat 739.450 kb on - strandat 739.500 kb on + strandat 739.500 kb on + strandat 739.500 kb on + strandat 739.503 kb on - strandat 739.508 kb on - strandat 739.508 kb on - strandat 739.508 kb on - strandat 739.510 kb on + strandat 739.510 kb on + strandat 739.510 kb on + strandat 739.510 kb on + strandat 739.518 kb on - strandat 739.518 kb on - strandat 739.518 kb on - strandat 739.518 kb on - strandat 739.518 kb on - strandat 739.524 kb on + strandat 739.534 kb on - strandat 739.652 kb on + strandat 739.669 kb on + strandat 739.706 kb on - strandat 739.812 kb on - strand, within BWI76_RS03575at 739.860 kb on + strand, within BWI76_RS03575at 739.918 kb on + strand, within BWI76_RS03575at 739.926 kb on - strand, within BWI76_RS03575at 739.931 kb on - strand, within BWI76_RS03575at 739.940 kb on - strand, within BWI76_RS03575at 739.968 kb on + strand, within BWI76_RS03575at 739.995 kb on - strand, within BWI76_RS03575at 740.521 kb on + strand, within BWI76_RS03575at 740.641 kb on - strand, within BWI76_RS03575at 740.666 kb on + strand, within BWI76_RS03575at 740.710 kb on + strand, within BWI76_RS03575at 740.758 kb on - strand, within BWI76_RS03575at 740.850 kb on + strand, within BWI76_RS03575at 740.876 kb on + strand, within BWI76_RS03575at 740.907 kb on - strand, within BWI76_RS03575at 740.920 kb on - strand, within BWI76_RS03575at 740.981 kb on - strand, within BWI76_RS03575at 740.983 kb on + strand, within BWI76_RS03575at 741.052 kb on + strand, within BWI76_RS03575at 741.120 kb on - strand, within BWI76_RS03575at 741.144 kb on - strand, within BWI76_RS03575at 741.329 kb on + strand, within BWI76_RS03575at 741.428 kb on + strand, within BWI76_RS03575at 741.436 kb on - strand, within BWI76_RS03575at 741.436 kb on - strand, within BWI76_RS03575at 741.545 kb on - strand, within BWI76_RS03575at 741.552 kb on - strand, within BWI76_RS03575at 741.787 kb on + strand, within BWI76_RS03575at 741.819 kb on + strand, within BWI76_RS03575at 741.997 kb on - strand, within BWI76_RS03575at 742.279 kb on - strand, within BWI76_RS03575at 742.322 kb on - strand, within BWI76_RS03575at 742.612 kb on + strandat 742.819 kb on + strandat 742.819 kb on + strandat 742.827 kb on - strandat 742.827 kb on - strandat 742.841 kb on + strandat 742.841 kb on + strandat 742.841 kb on + strandat 742.888 kb on + strandat 743.040 kb on + strand, within BWI76_RS03580at 743.073 kb on - strand, within BWI76_RS03580at 743.102 kb on - strand, within BWI76_RS03580at 743.292 kb on + strand, within BWI76_RS03580at 743.655 kb on + strand, within BWI76_RS03580at 743.685 kb on + strand, within BWI76_RS03580

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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738,513 + +0.8
738,513 + -0.3
738,513 + -0.2
738,513 + -0.2
738,521 - -0.0
738,553 + BWI76_RS03570 0.10 +0.5
738,553 + BWI76_RS03570 0.10 -0.5
738,561 - BWI76_RS03570 0.11 -1.8
738,561 - BWI76_RS03570 0.11 -1.1
738,592 + BWI76_RS03570 0.14 -0.3
738,596 + BWI76_RS03570 0.15 +0.3
738,604 - BWI76_RS03570 0.16 +0.7
738,676 + BWI76_RS03570 0.23 +0.3
738,697 - +0.2
738,744 - BWI76_RS03570 0.31 +0.0
738,748 + BWI76_RS03570 0.31 +0.8
738,757 - BWI76_RS03570 0.32 +0.3
738,757 - BWI76_RS03570 0.32 -0.2
738,801 - BWI76_RS03570 0.37 +0.1
738,846 - BWI76_RS03570 0.41 +0.3
738,846 - BWI76_RS03570 0.41 -0.9
738,875 + BWI76_RS03570 0.44 +0.1
738,880 + BWI76_RS03570 0.45 -0.3
738,886 - BWI76_RS03570 0.46 +0.9
738,904 + BWI76_RS03570 0.48 -0.9
738,904 + BWI76_RS03570 0.48 +0.3
738,909 - BWI76_RS03570 0.48 -0.4
738,912 - BWI76_RS03570 0.48 +0.4
738,912 - BWI76_RS03570 0.48 +0.5
738,912 - BWI76_RS03570 0.48 -0.4
738,912 - BWI76_RS03570 0.48 +0.3
738,945 + BWI76_RS03570 0.52 -0.4
738,962 + BWI76_RS03570 0.54 -0.8
738,962 + BWI76_RS03570 0.54 -0.4
739,028 - BWI76_RS03570 0.61 +1.4
739,043 - BWI76_RS03570 0.62 +1.1
739,066 - BWI76_RS03570 0.65 +0.1
739,098 - BWI76_RS03570 0.68 +0.6
739,098 - BWI76_RS03570 0.68 -0.4
739,098 - BWI76_RS03570 0.68 +1.3
739,099 + BWI76_RS03570 0.68 -0.2
739,113 - BWI76_RS03570 0.70 -0.3
739,195 - BWI76_RS03570 0.78 +1.3
739,199 + BWI76_RS03570 0.79 -0.5
739,207 - BWI76_RS03570 0.80 +1.2
739,207 - BWI76_RS03570 0.80 -0.7
739,207 - BWI76_RS03570 0.80 +0.1
739,207 - BWI76_RS03570 0.80 +1.3
739,207 - BWI76_RS03570 0.80 -0.5
739,207 - BWI76_RS03570 0.80 -1.5
739,207 - BWI76_RS03570 0.80 +0.3
739,233 - BWI76_RS03570 0.82 +1.4
739,233 - BWI76_RS03570 0.82 -0.1
739,246 + BWI76_RS03570 0.84 +1.0
739,267 + BWI76_RS03570 0.86 +0.9
739,268 - BWI76_RS03570 0.86 +5.4
739,275 - BWI76_RS03570 0.87 +0.3
739,275 - BWI76_RS03570 0.87 +2.8
739,275 - BWI76_RS03570 0.87 -0.3
739,275 - BWI76_RS03570 0.87 -0.0
739,275 - BWI76_RS03570 0.87 +1.9
739,417 + -0.1
739,421 + +1.8
739,421 + +1.2
739,426 + -1.9
739,426 + -1.0
739,426 + +0.8
739,429 - -0.3
739,434 - -0.5
739,434 - -0.2
739,450 - -0.7
739,500 + -0.3
739,500 + -0.8
739,500 + +0.5
739,503 - -0.5
739,508 - +1.3
739,508 - -0.1
739,508 - +0.0
739,510 + -0.4
739,510 + -1.1
739,510 + +0.3
739,510 + +0.4
739,518 - +1.5
739,518 - -0.7
739,518 - +0.5
739,518 - +3.2
739,518 - -0.5
739,524 + -0.9
739,534 - +0.2
739,652 + -0.2
739,669 + +0.5
739,706 - +0.9
739,812 - BWI76_RS03575 0.11 -6.4
739,860 + BWI76_RS03575 0.12 +2.0
739,918 + BWI76_RS03575 0.14 -1.1
739,926 - BWI76_RS03575 0.14 -1.6
739,931 - BWI76_RS03575 0.14 +0.0
739,940 - BWI76_RS03575 0.14 +0.4
739,968 + BWI76_RS03575 0.15 -0.3
739,995 - BWI76_RS03575 0.16 -0.3
740,521 + BWI76_RS03575 0.32 -0.3
740,641 - BWI76_RS03575 0.35 -0.7
740,666 + BWI76_RS03575 0.36 +0.2
740,710 + BWI76_RS03575 0.37 -0.3
740,758 - BWI76_RS03575 0.39 +0.4
740,850 + BWI76_RS03575 0.41 -0.6
740,876 + BWI76_RS03575 0.42 +0.3
740,907 - BWI76_RS03575 0.43 -0.0
740,920 - BWI76_RS03575 0.43 -0.4
740,981 - BWI76_RS03575 0.45 +0.0
740,983 + BWI76_RS03575 0.45 +0.1
741,052 + BWI76_RS03575 0.47 -1.4
741,120 - BWI76_RS03575 0.49 +1.5
741,144 - BWI76_RS03575 0.50 -1.0
741,329 + BWI76_RS03575 0.55 -0.5
741,428 + BWI76_RS03575 0.58 -0.3
741,436 - BWI76_RS03575 0.59 -2.6
741,436 - BWI76_RS03575 0.59 -0.1
741,545 - BWI76_RS03575 0.62 +0.6
741,552 - BWI76_RS03575 0.62 -0.4
741,787 + BWI76_RS03575 0.69 -1.7
741,819 + BWI76_RS03575 0.70 -0.9
741,997 - BWI76_RS03575 0.75 -0.5
742,279 - BWI76_RS03575 0.83 -0.4
742,322 - BWI76_RS03575 0.85 +0.6
742,612 + -0.0
742,819 + -1.0
742,819 + -0.8
742,827 - -0.1
742,827 - +0.5
742,841 + +0.1
742,841 + +2.1
742,841 + +0.4
742,888 + +0.9
743,040 + BWI76_RS03580 0.15 +1.0
743,073 - BWI76_RS03580 0.18 +1.5
743,102 - BWI76_RS03580 0.21 +0.4
743,292 + BWI76_RS03580 0.37 +0.2
743,655 + BWI76_RS03580 0.69 +0.3
743,685 + BWI76_RS03580 0.72 -0.6

Or see this region's nucleotide sequence