Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22395

Experiment: Parafilmed volatile agar plate with no fungus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS22390 and BWI76_RS22395 are separated by 223 nucleotidesBWI76_RS22395 and BWI76_RS22400 are separated by 174 nucleotidesBWI76_RS22400 and BWI76_RS22405 are separated by 9 nucleotides BWI76_RS22390: BWI76_RS22390 - maltoporin, at 4,668,843 to 4,670,186 _RS22390 BWI76_RS22395: BWI76_RS22395 - hypothetical protein, at 4,670,410 to 4,671,681 _RS22395 BWI76_RS22400: BWI76_RS22400 - PTS sugar transporter subunit IIB, at 4,671,856 to 4,672,170 _RS22400 BWI76_RS22405: BWI76_RS22405 - PTS cellobiose transporter subunit IIC, at 4,672,180 to 4,673,502 _RS22405 Position (kb) 4670 4671 4672Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 4669.540 kb on - strand, within BWI76_RS22390at 4669.546 kb on - strand, within BWI76_RS22390at 4669.587 kb on + strand, within BWI76_RS22390at 4669.751 kb on + strand, within BWI76_RS22390at 4669.756 kb on - strand, within BWI76_RS22390at 4670.017 kb on + strand, within BWI76_RS22390at 4670.079 kb on + strandat 4670.343 kb on + strandat 4670.409 kb on - strandat 4670.755 kb on - strand, within BWI76_RS22395at 4670.760 kb on + strand, within BWI76_RS22395at 4670.765 kb on + strand, within BWI76_RS22395at 4671.060 kb on - strand, within BWI76_RS22395at 4671.287 kb on - strand, within BWI76_RS22395at 4671.347 kb on + strand, within BWI76_RS22395at 4671.412 kb on - strand, within BWI76_RS22395at 4671.755 kb on - strandat 4671.868 kb on + strandat 4672.077 kb on - strand, within BWI76_RS22400at 4672.184 kb on - strandat 4672.198 kb on + strandat 4672.294 kb on + strandat 4672.308 kb on - strandat 4672.422 kb on - strand, within BWI76_RS22405at 4672.614 kb on - strand, within BWI76_RS22405

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
remove
4,669,540 - BWI76_RS22390 0.52 -1.5
4,669,546 - BWI76_RS22390 0.52 -0.8
4,669,587 + BWI76_RS22390 0.55 +1.3
4,669,751 + BWI76_RS22390 0.68 -0.2
4,669,756 - BWI76_RS22390 0.68 -0.1
4,670,017 + BWI76_RS22390 0.87 +2.2
4,670,079 + -1.1
4,670,343 + -0.6
4,670,409 - -0.2
4,670,755 - BWI76_RS22395 0.27 -0.2
4,670,760 + BWI76_RS22395 0.28 +5.1
4,670,765 + BWI76_RS22395 0.28 +0.0
4,671,060 - BWI76_RS22395 0.51 +0.1
4,671,287 - BWI76_RS22395 0.69 +0.3
4,671,347 + BWI76_RS22395 0.74 -0.6
4,671,412 - BWI76_RS22395 0.79 +0.7
4,671,755 - -0.7
4,671,868 + -0.3
4,672,077 - BWI76_RS22400 0.70 -1.9
4,672,184 - +0.1
4,672,198 + -0.4
4,672,294 + +1.5
4,672,308 - +0.8
4,672,422 - BWI76_RS22405 0.18 -0.3
4,672,614 - BWI76_RS22405 0.33 -0.6

Or see this region's nucleotide sequence