Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19555 and BWI76_RS19560 are separated by 165 nucleotides BWI76_RS19560 and BWI76_RS19565 are separated by 152 nucleotides
BWI76_RS19555: BWI76_RS19555 - Beta-glucoside phosphotransferase system, IIA/IIB/IIC components (from data) , at 4,087,643 to 4,089,502
_RS19555
BWI76_RS19560: BWI76_RS19560 - beta-1,4-xylanase, at 4,089,668 to 4,090,501
_RS19560
BWI76_RS19565: BWI76_RS19565 - tRNA dihydrouridine(16) synthase DusC, at 4,090,654 to 4,091,592
_RS19565
Position (kb)
4089
4090
4091 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6
7 at 4088.833 kb on + strand, within BWI76_RS19555 at 4089.122 kb on + strand, within BWI76_RS19555 at 4089.130 kb on + strand, within BWI76_RS19555 at 4089.167 kb on - strand, within BWI76_RS19555 at 4089.430 kb on + strand at 4089.438 kb on - strand at 4089.470 kb on + strand at 4089.479 kb on - strand at 4089.545 kb on - strand at 4089.782 kb on + strand, within BWI76_RS19560 at 4089.866 kb on - strand, within BWI76_RS19560 at 4089.985 kb on - strand, within BWI76_RS19560 at 4090.013 kb on - strand, within BWI76_RS19560 at 4090.071 kb on - strand, within BWI76_RS19560 at 4090.120 kb on + strand, within BWI76_RS19560 at 4090.156 kb on - strand, within BWI76_RS19560 at 4090.224 kb on - strand, within BWI76_RS19560 at 4090.303 kb on + strand, within BWI76_RS19560 at 4090.432 kb on - strand at 4090.436 kb on - strand at 4090.596 kb on - strand at 4090.715 kb on + strand at 4090.723 kb on - strand at 4090.723 kb on - strand at 4090.733 kb on + strand at 4090.856 kb on - strand, within BWI76_RS19565 at 4090.858 kb on + strand, within BWI76_RS19565 at 4090.906 kb on + strand, within BWI76_RS19565 at 4091.197 kb on + strand, within BWI76_RS19565 at 4091.311 kb on - strand, within BWI76_RS19565 at 4091.436 kb on + strand, within BWI76_RS19565 at 4091.444 kb on - strand, within BWI76_RS19565
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 4,088,833 + BWI76_RS19555 0.64 -0.7 4,089,122 + BWI76_RS19555 0.80 +0.5 4,089,130 + BWI76_RS19555 0.80 +0.2 4,089,167 - BWI76_RS19555 0.82 +0.4 4,089,430 + -0.3 4,089,438 - -0.9 4,089,470 + +0.3 4,089,479 - +7.7 4,089,545 - +0.4 4,089,782 + BWI76_RS19560 0.14 +2.2 4,089,866 - BWI76_RS19560 0.24 +1.2 4,089,985 - BWI76_RS19560 0.38 +0.0 4,090,013 - BWI76_RS19560 0.41 +2.5 4,090,071 - BWI76_RS19560 0.48 -0.2 4,090,120 + BWI76_RS19560 0.54 +0.7 4,090,156 - BWI76_RS19560 0.59 -0.7 4,090,224 - BWI76_RS19560 0.67 +0.7 4,090,303 + BWI76_RS19560 0.76 +0.8 4,090,432 - -1.0 4,090,436 - +4.3 4,090,596 - -0.3 4,090,715 + -0.3 4,090,723 - -0.6 4,090,723 - -0.7 4,090,733 + +5.4 4,090,856 - BWI76_RS19565 0.22 +0.1 4,090,858 + BWI76_RS19565 0.22 +0.1 4,090,906 + BWI76_RS19565 0.27 +2.3 4,091,197 + BWI76_RS19565 0.58 -0.6 4,091,311 - BWI76_RS19565 0.70 +0.4 4,091,436 + BWI76_RS19565 0.83 -0.3 4,091,444 - BWI76_RS19565 0.84 -0.1
Or see this region's nucleotide sequence