Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19335

Experiment: Parafilmed volatile agar plate with no fungus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS19330 and BWI76_RS19335 are separated by 48 nucleotidesBWI76_RS19335 and BWI76_RS19340 are separated by 68 nucleotides BWI76_RS19330: BWI76_RS19330 - HAD family hydrolase, at 4,027,377 to 4,028,039 _RS19330 BWI76_RS19335: BWI76_RS19335 - MFS transporter, at 4,028,088 to 4,029,365 _RS19335 BWI76_RS19340: BWI76_RS19340 - xylulokinase, at 4,029,434 to 4,030,897 _RS19340 Position (kb) 4028 4029 4030Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 4027.948 kb on - strand, within BWI76_RS19330at 4028.218 kb on + strand, within BWI76_RS19335at 4028.603 kb on - strand, within BWI76_RS19335at 4028.637 kb on + strand, within BWI76_RS19335at 4028.643 kb on - strand, within BWI76_RS19335at 4028.698 kb on + strand, within BWI76_RS19335at 4028.698 kb on + strand, within BWI76_RS19335at 4028.698 kb on + strand, within BWI76_RS19335at 4028.706 kb on - strand, within BWI76_RS19335at 4028.706 kb on - strand, within BWI76_RS19335at 4028.706 kb on - strand, within BWI76_RS19335at 4028.878 kb on - strand, within BWI76_RS19335at 4028.900 kb on + strand, within BWI76_RS19335at 4029.173 kb on - strand, within BWI76_RS19335at 4029.389 kb on - strandat 4029.795 kb on + strand, within BWI76_RS19340at 4029.915 kb on + strand, within BWI76_RS19340at 4030.277 kb on + strand, within BWI76_RS19340at 4030.302 kb on - strand, within BWI76_RS19340at 4030.325 kb on - strand, within BWI76_RS19340

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
remove
4,027,948 - BWI76_RS19330 0.86 -0.2
4,028,218 + BWI76_RS19335 0.10 +0.2
4,028,603 - BWI76_RS19335 0.40 -0.4
4,028,637 + BWI76_RS19335 0.43 +1.7
4,028,643 - BWI76_RS19335 0.43 -0.5
4,028,698 + BWI76_RS19335 0.48 -1.3
4,028,698 + BWI76_RS19335 0.48 +6.1
4,028,698 + BWI76_RS19335 0.48 -1.7
4,028,706 - BWI76_RS19335 0.48 -0.5
4,028,706 - BWI76_RS19335 0.48 +2.2
4,028,706 - BWI76_RS19335 0.48 -2.7
4,028,878 - BWI76_RS19335 0.62 +0.5
4,028,900 + BWI76_RS19335 0.64 -1.2
4,029,173 - BWI76_RS19335 0.85 -0.2
4,029,389 - +0.3
4,029,795 + BWI76_RS19340 0.25 +0.5
4,029,915 + BWI76_RS19340 0.33 +0.2
4,030,277 + BWI76_RS19340 0.58 -2.8
4,030,302 - BWI76_RS19340 0.59 +2.2
4,030,325 - BWI76_RS19340 0.61 -1.1

Or see this region's nucleotide sequence