Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19260

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19255 and BWI76_RS19260 are separated by 0 nucleotidesBWI76_RS19260 and BWI76_RS19265 are separated by 1 nucleotides BWI76_RS19255: BWI76_RS19255 - multidrug transporter subunit MdtB, at 4,006,342 to 4,009,464 _RS19255 BWI76_RS19260: BWI76_RS19260 - multidrug transporter subunit MdtC, at 4,009,465 to 4,012,542 _RS19260 BWI76_RS19265: BWI76_RS19265 - multidrug transporter subunit MdtD, at 4,012,544 to 4,013,959 _RS19265 Position (kb) 4009 4010 4011 4012 4013Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 4008.564 kb on + strand, within BWI76_RS19255at 4008.643 kb on + strand, within BWI76_RS19255at 4008.815 kb on + strand, within BWI76_RS19255at 4009.196 kb on - strandat 4009.196 kb on - strandat 4009.531 kb on - strandat 4009.541 kb on - strandat 4009.797 kb on + strand, within BWI76_RS19260at 4009.856 kb on + strand, within BWI76_RS19260at 4009.966 kb on - strand, within BWI76_RS19260at 4010.021 kb on + strandat 4010.422 kb on + strand, within BWI76_RS19260at 4010.430 kb on - strand, within BWI76_RS19260at 4010.509 kb on - strand, within BWI76_RS19260at 4010.513 kb on + strand, within BWI76_RS19260at 4010.599 kb on - strand, within BWI76_RS19260at 4010.685 kb on + strand, within BWI76_RS19260at 4010.704 kb on + strand, within BWI76_RS19260at 4011.061 kb on - strand, within BWI76_RS19260at 4011.383 kb on - strand, within BWI76_RS19260at 4011.458 kb on - strand, within BWI76_RS19260at 4011.553 kb on + strand, within BWI76_RS19260at 4011.878 kb on + strand, within BWI76_RS19260at 4012.058 kb on - strand, within BWI76_RS19260at 4012.059 kb on - strand, within BWI76_RS19260at 4012.072 kb on + strand, within BWI76_RS19260at 4012.108 kb on - strand, within BWI76_RS19260at 4012.198 kb on - strand, within BWI76_RS19260at 4012.260 kb on + strandat 4012.597 kb on - strandat 4012.755 kb on + strand, within BWI76_RS19265at 4012.763 kb on - strand, within BWI76_RS19265at 4012.795 kb on + strandat 4012.850 kb on - strand, within BWI76_RS19265at 4012.944 kb on - strand, within BWI76_RS19265at 4013.012 kb on + strand, within BWI76_RS19265at 4013.429 kb on - strand, within BWI76_RS19265

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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4,008,564 + BWI76_RS19255 0.71 +1.8
4,008,643 + BWI76_RS19255 0.74 -0.2
4,008,815 + BWI76_RS19255 0.79 -0.3
4,009,196 - -0.5
4,009,196 - +0.6
4,009,531 - -0.2
4,009,541 - -2.5
4,009,797 + BWI76_RS19260 0.11 -0.3
4,009,856 + BWI76_RS19260 0.13 +0.0
4,009,966 - BWI76_RS19260 0.16 -0.1
4,010,021 + +0.4
4,010,422 + BWI76_RS19260 0.31 -0.7
4,010,430 - BWI76_RS19260 0.31 +6.8
4,010,509 - BWI76_RS19260 0.34 -0.5
4,010,513 + BWI76_RS19260 0.34 -0.2
4,010,599 - BWI76_RS19260 0.37 -2.4
4,010,685 + BWI76_RS19260 0.40 +4.7
4,010,704 + BWI76_RS19260 0.40 +0.4
4,011,061 - BWI76_RS19260 0.52 +0.0
4,011,383 - BWI76_RS19260 0.62 -0.1
4,011,458 - BWI76_RS19260 0.65 -0.1
4,011,553 + BWI76_RS19260 0.68 -0.6
4,011,878 + BWI76_RS19260 0.78 +0.0
4,012,058 - BWI76_RS19260 0.84 -0.1
4,012,059 - BWI76_RS19260 0.84 -0.3
4,012,072 + BWI76_RS19260 0.85 -1.3
4,012,108 - BWI76_RS19260 0.86 +0.3
4,012,198 - BWI76_RS19260 0.89 +0.7
4,012,260 + -0.5
4,012,597 - +0.7
4,012,755 + BWI76_RS19265 0.15 -0.1
4,012,763 - BWI76_RS19265 0.15 -0.4
4,012,795 + -0.2
4,012,850 - BWI76_RS19265 0.22 -0.4
4,012,944 - BWI76_RS19265 0.28 +0.7
4,013,012 + BWI76_RS19265 0.33 -0.1
4,013,429 - BWI76_RS19265 0.62 +3.0

Or see this region's nucleotide sequence