Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18785

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18780 and BWI76_RS18785 are separated by 180 nucleotidesBWI76_RS18785 and BWI76_RS18790 are separated by 104 nucleotides BWI76_RS18780: BWI76_RS18780 - D-alanyl-D-alanine carboxypeptidase, at 3,891,935 to 3,893,101 _RS18780 BWI76_RS18785: BWI76_RS18785 - exodeoxyribonuclease I, at 3,893,282 to 3,894,706 _RS18785 BWI76_RS18790: BWI76_RS18790 - elongation factor G, at 3,894,811 to 3,896,913 _RS18790 Position (kb) 3893 3894 3895Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7at 3892.470 kb on - strand, within BWI76_RS18780at 3892.495 kb on - strand, within BWI76_RS18780at 3892.736 kb on + strand, within BWI76_RS18780at 3893.201 kb on + strandat 3893.209 kb on - strandat 3893.282 kb on + strandat 3893.466 kb on + strand, within BWI76_RS18785at 3893.730 kb on + strand, within BWI76_RS18785at 3894.055 kb on + strand, within BWI76_RS18785at 3894.063 kb on - strand, within BWI76_RS18785at 3894.553 kb on + strand, within BWI76_RS18785at 3894.667 kb on + strandat 3894.667 kb on + strandat 3894.796 kb on - strandat 3894.911 kb on + strandat 3895.005 kb on - strandat 3895.166 kb on - strand, within BWI76_RS18790at 3895.274 kb on + strand, within BWI76_RS18790at 3895.358 kb on - strand, within BWI76_RS18790at 3895.365 kb on + strand, within BWI76_RS18790at 3895.572 kb on - strand, within BWI76_RS18790

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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3,892,470 - BWI76_RS18780 0.46 +7.6
3,892,495 - BWI76_RS18780 0.48 +0.5
3,892,736 + BWI76_RS18780 0.69 +0.7
3,893,201 + +0.8
3,893,209 - +0.8
3,893,282 + -1.3
3,893,466 + BWI76_RS18785 0.13 -1.0
3,893,730 + BWI76_RS18785 0.31 -0.7
3,894,055 + BWI76_RS18785 0.54 +0.1
3,894,063 - BWI76_RS18785 0.55 +0.6
3,894,553 + BWI76_RS18785 0.89 -0.4
3,894,667 + -1.0
3,894,667 + -0.8
3,894,796 - +0.7
3,894,911 + +0.4
3,895,005 - +0.3
3,895,166 - BWI76_RS18790 0.17 +0.9
3,895,274 + BWI76_RS18790 0.22 +0.2
3,895,358 - BWI76_RS18790 0.26 -1.4
3,895,365 + BWI76_RS18790 0.26 +0.2
3,895,572 - BWI76_RS18790 0.36 -0.5

Or see this region's nucleotide sequence