Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18780

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18775 and BWI76_RS18780 are separated by 153 nucleotidesBWI76_RS18780 and BWI76_RS18785 are separated by 180 nucleotides BWI76_RS18775: BWI76_RS18775 - hypothetical protein, at 3,890,345 to 3,891,781 _RS18775 BWI76_RS18780: BWI76_RS18780 - D-alanyl-D-alanine carboxypeptidase, at 3,891,935 to 3,893,101 _RS18780 BWI76_RS18785: BWI76_RS18785 - exodeoxyribonuclease I, at 3,893,282 to 3,894,706 _RS18785 Position (kb) 3891 3892 3893 3894Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7at 3891.253 kb on + strand, within BWI76_RS18775at 3891.441 kb on + strand, within BWI76_RS18775at 3891.449 kb on - strand, within BWI76_RS18775at 3891.553 kb on - strand, within BWI76_RS18775at 3891.782 kb on - strandat 3891.845 kb on - strandat 3891.850 kb on - strandat 3892.470 kb on - strand, within BWI76_RS18780at 3892.495 kb on - strand, within BWI76_RS18780at 3892.736 kb on + strand, within BWI76_RS18780at 3893.201 kb on + strandat 3893.209 kb on - strandat 3893.282 kb on + strandat 3893.466 kb on + strand, within BWI76_RS18785at 3893.730 kb on + strand, within BWI76_RS18785at 3894.055 kb on + strand, within BWI76_RS18785at 3894.063 kb on - strand, within BWI76_RS18785

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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3,891,253 + BWI76_RS18775 0.63 +1.3
3,891,441 + BWI76_RS18775 0.76 +0.6
3,891,449 - BWI76_RS18775 0.77 +0.1
3,891,553 - BWI76_RS18775 0.84 -0.1
3,891,782 - +0.2
3,891,845 - +2.8
3,891,850 - -1.6
3,892,470 - BWI76_RS18780 0.46 +7.6
3,892,495 - BWI76_RS18780 0.48 +0.5
3,892,736 + BWI76_RS18780 0.69 +0.7
3,893,201 + +0.8
3,893,209 - +0.8
3,893,282 + -1.3
3,893,466 + BWI76_RS18785 0.13 -1.0
3,893,730 + BWI76_RS18785 0.31 -0.7
3,894,055 + BWI76_RS18785 0.54 +0.1
3,894,063 - BWI76_RS18785 0.55 +0.6

Or see this region's nucleotide sequence