Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18645 and BWI76_RS18650 are separated by 71 nucleotides BWI76_RS18650 and BWI76_RS18655 are separated by 46 nucleotides BWI76_RS18655 and BWI76_RS18660 are separated by 75 nucleotides
BWI76_RS18645: BWI76_RS18645 - type-1 fimbrial protein subunit A, at 3,865,545 to 3,866,090
_RS18645
BWI76_RS18650: BWI76_RS18650 - fimbrial protein, at 3,866,162 to 3,866,698
_RS18650
BWI76_RS18655: BWI76_RS18655 - chaperone FimC, periplasmic, at 3,866,745 to 3,867,455
_RS18655
BWI76_RS18660: BWI76_RS18660 - hypothetical protein, at 3,867,531 to 3,870,158
_RS18660
Position (kb)
3866
3867
3868 Strain fitness (log2 ratio)
-2
-1
0
1 at 3865.756 kb on + strand, within BWI76_RS18645 at 3865.759 kb on - strand, within BWI76_RS18645 at 3865.761 kb on + strand, within BWI76_RS18645 at 3865.887 kb on - strand, within BWI76_RS18645 at 3865.907 kb on - strand, within BWI76_RS18645 at 3865.909 kb on + strand, within BWI76_RS18645 at 3865.990 kb on + strand, within BWI76_RS18645 at 3866.119 kb on + strand at 3866.394 kb on + strand, within BWI76_RS18650 at 3866.404 kb on + strand, within BWI76_RS18650 at 3866.438 kb on + strand, within BWI76_RS18650 at 3866.517 kb on + strand, within BWI76_RS18650 at 3866.525 kb on - strand, within BWI76_RS18650 at 3866.552 kb on - strand, within BWI76_RS18650 at 3866.849 kb on + strand, within BWI76_RS18655 at 3867.285 kb on - strand, within BWI76_RS18655 at 3867.421 kb on + strand at 3867.473 kb on + strand at 3867.474 kb on + strand at 3867.512 kb on + strand at 3867.580 kb on - strand at 3867.653 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 3,865,756 + BWI76_RS18645 0.39 +0.6 3,865,759 - BWI76_RS18645 0.39 +0.0 3,865,761 + BWI76_RS18645 0.40 -2.3 3,865,887 - BWI76_RS18645 0.63 -0.6 3,865,907 - BWI76_RS18645 0.66 -2.0 3,865,909 + BWI76_RS18645 0.67 -0.3 3,865,990 + BWI76_RS18645 0.82 +0.5 3,866,119 + -0.3 3,866,394 + BWI76_RS18650 0.43 +0.3 3,866,404 + BWI76_RS18650 0.45 -0.0 3,866,438 + BWI76_RS18650 0.51 +0.2 3,866,517 + BWI76_RS18650 0.66 +0.5 3,866,525 - BWI76_RS18650 0.68 -1.8 3,866,552 - BWI76_RS18650 0.73 -0.3 3,866,849 + BWI76_RS18655 0.15 +1.1 3,867,285 - BWI76_RS18655 0.76 +0.3 3,867,421 + -1.2 3,867,473 + +1.2 3,867,474 + -0.3 3,867,512 + +0.3 3,867,580 - -0.4 3,867,653 + +1.1
Or see this region's nucleotide sequence