Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16775 and BWI76_RS16780 are separated by 237 nucleotides BWI76_RS16780 and BWI76_RS16785 are separated by 151 nucleotides
BWI76_RS16775: BWI76_RS16775 - malate/lactate/ureidoglycolate dehydrogenase, at 3,476,283 to 3,477,365
_RS16775
BWI76_RS16780: BWI76_RS16780 - formate dehydrogenase subunit alpha, at 3,477,603 to 3,479,753
_RS16780
BWI76_RS16785: BWI76_RS16785 - peptidase M20, at 3,479,905 to 3,481,056
_RS16785
Position (kb)
3477
3478
3479
3480 Strain fitness (log2 ratio)
-1
0
1 at 3477.146 kb on + strand, within BWI76_RS16775 at 3477.180 kb on - strand, within BWI76_RS16775 at 3477.202 kb on + strand, within BWI76_RS16775 at 3477.533 kb on + strand at 3477.556 kb on - strand at 3477.591 kb on + strand at 3477.620 kb on + strand at 3478.000 kb on - strand, within BWI76_RS16780 at 3478.275 kb on + strand, within BWI76_RS16780 at 3478.323 kb on + strand, within BWI76_RS16780 at 3478.336 kb on - strand, within BWI76_RS16780 at 3478.517 kb on - strand, within BWI76_RS16780 at 3478.776 kb on + strand, within BWI76_RS16780 at 3478.798 kb on - strand, within BWI76_RS16780 at 3478.861 kb on + strand, within BWI76_RS16780 at 3478.976 kb on - strand, within BWI76_RS16780 at 3479.139 kb on + strand, within BWI76_RS16780 at 3479.202 kb on + strand, within BWI76_RS16780 at 3479.341 kb on - strand, within BWI76_RS16780 at 3479.343 kb on - strand, within BWI76_RS16780 at 3479.645 kb on - strand at 3479.686 kb on - strand at 3479.715 kb on - strand at 3479.930 kb on + strand at 3480.260 kb on + strand, within BWI76_RS16785 at 3480.268 kb on - strand, within BWI76_RS16785 at 3480.303 kb on - strand, within BWI76_RS16785 at 3480.509 kb on - strand, within BWI76_RS16785 at 3480.580 kb on + strand, within BWI76_RS16785
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 3,477,146 + BWI76_RS16775 0.80 +0.6 3,477,180 - BWI76_RS16775 0.83 -0.2 3,477,202 + BWI76_RS16775 0.85 +0.4 3,477,533 + +0.3 3,477,556 - -1.0 3,477,591 + +0.1 3,477,620 + +0.3 3,478,000 - BWI76_RS16780 0.18 +0.0 3,478,275 + BWI76_RS16780 0.31 +0.0 3,478,323 + BWI76_RS16780 0.33 -0.2 3,478,336 - BWI76_RS16780 0.34 +0.0 3,478,517 - BWI76_RS16780 0.42 -0.2 3,478,776 + BWI76_RS16780 0.55 -0.7 3,478,798 - BWI76_RS16780 0.56 -0.0 3,478,861 + BWI76_RS16780 0.58 +0.1 3,478,976 - BWI76_RS16780 0.64 +0.4 3,479,139 + BWI76_RS16780 0.71 -0.9 3,479,202 + BWI76_RS16780 0.74 +0.6 3,479,341 - BWI76_RS16780 0.81 +0.4 3,479,343 - BWI76_RS16780 0.81 +0.3 3,479,645 - +0.6 3,479,686 - -0.2 3,479,715 - -0.2 3,479,930 + -0.6 3,480,260 + BWI76_RS16785 0.31 -1.4 3,480,268 - BWI76_RS16785 0.32 -0.4 3,480,303 - BWI76_RS16785 0.35 +0.6 3,480,509 - BWI76_RS16785 0.52 -0.5 3,480,580 + BWI76_RS16785 0.59 +1.2
Or see this region's nucleotide sequence