Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16780

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16775 and BWI76_RS16780 are separated by 237 nucleotidesBWI76_RS16780 and BWI76_RS16785 are separated by 151 nucleotides BWI76_RS16775: BWI76_RS16775 - malate/lactate/ureidoglycolate dehydrogenase, at 3,476,283 to 3,477,365 _RS16775 BWI76_RS16780: BWI76_RS16780 - formate dehydrogenase subunit alpha, at 3,477,603 to 3,479,753 _RS16780 BWI76_RS16785: BWI76_RS16785 - peptidase M20, at 3,479,905 to 3,481,056 _RS16785 Position (kb) 3477 3478 3479 3480Strain fitness (log2 ratio) -1 0 1at 3477.146 kb on + strand, within BWI76_RS16775at 3477.180 kb on - strand, within BWI76_RS16775at 3477.202 kb on + strand, within BWI76_RS16775at 3477.533 kb on + strandat 3477.556 kb on - strandat 3477.591 kb on + strandat 3477.620 kb on + strandat 3478.000 kb on - strand, within BWI76_RS16780at 3478.275 kb on + strand, within BWI76_RS16780at 3478.323 kb on + strand, within BWI76_RS16780at 3478.336 kb on - strand, within BWI76_RS16780at 3478.517 kb on - strand, within BWI76_RS16780at 3478.776 kb on + strand, within BWI76_RS16780at 3478.798 kb on - strand, within BWI76_RS16780at 3478.861 kb on + strand, within BWI76_RS16780at 3478.976 kb on - strand, within BWI76_RS16780at 3479.139 kb on + strand, within BWI76_RS16780at 3479.202 kb on + strand, within BWI76_RS16780at 3479.341 kb on - strand, within BWI76_RS16780at 3479.343 kb on - strand, within BWI76_RS16780at 3479.645 kb on - strandat 3479.686 kb on - strandat 3479.715 kb on - strandat 3479.930 kb on + strandat 3480.260 kb on + strand, within BWI76_RS16785at 3480.268 kb on - strand, within BWI76_RS16785at 3480.303 kb on - strand, within BWI76_RS16785at 3480.509 kb on - strand, within BWI76_RS16785at 3480.580 kb on + strand, within BWI76_RS16785

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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3,477,146 + BWI76_RS16775 0.80 +0.6
3,477,180 - BWI76_RS16775 0.83 -0.2
3,477,202 + BWI76_RS16775 0.85 +0.4
3,477,533 + +0.3
3,477,556 - -1.0
3,477,591 + +0.1
3,477,620 + +0.3
3,478,000 - BWI76_RS16780 0.18 +0.0
3,478,275 + BWI76_RS16780 0.31 +0.0
3,478,323 + BWI76_RS16780 0.33 -0.2
3,478,336 - BWI76_RS16780 0.34 +0.0
3,478,517 - BWI76_RS16780 0.42 -0.2
3,478,776 + BWI76_RS16780 0.55 -0.7
3,478,798 - BWI76_RS16780 0.56 -0.0
3,478,861 + BWI76_RS16780 0.58 +0.1
3,478,976 - BWI76_RS16780 0.64 +0.4
3,479,139 + BWI76_RS16780 0.71 -0.9
3,479,202 + BWI76_RS16780 0.74 +0.6
3,479,341 - BWI76_RS16780 0.81 +0.4
3,479,343 - BWI76_RS16780 0.81 +0.3
3,479,645 - +0.6
3,479,686 - -0.2
3,479,715 - -0.2
3,479,930 + -0.6
3,480,260 + BWI76_RS16785 0.31 -1.4
3,480,268 - BWI76_RS16785 0.32 -0.4
3,480,303 - BWI76_RS16785 0.35 +0.6
3,480,509 - BWI76_RS16785 0.52 -0.5
3,480,580 + BWI76_RS16785 0.59 +1.2

Or see this region's nucleotide sequence