Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16290

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16285 and BWI76_RS16290 are separated by 25 nucleotidesBWI76_RS16290 and BWI76_RS16295 are separated by 174 nucleotides BWI76_RS16285: BWI76_RS16285 - hypothetical protein, at 3,379,804 to 3,381,309 _RS16285 BWI76_RS16290: BWI76_RS16290 - Mal regulon transcriptional regulator MalI, at 3,381,335 to 3,382,363 _RS16290 BWI76_RS16295: BWI76_RS16295 - bifunctional PTS system maltose and glucose-specific transporter subunits IICB, at 3,382,538 to 3,384,130 _RS16295 Position (kb) 3381 3382 3383Strain fitness (log2 ratio) -1 0 1 2 3 4at 3380.562 kb on + strand, within BWI76_RS16285at 3380.622 kb on - strand, within BWI76_RS16285at 3380.837 kb on - strand, within BWI76_RS16285at 3380.850 kb on + strand, within BWI76_RS16285at 3381.054 kb on - strand, within BWI76_RS16285at 3381.077 kb on - strand, within BWI76_RS16285at 3381.426 kb on - strandat 3381.444 kb on - strand, within BWI76_RS16290at 3381.494 kb on - strand, within BWI76_RS16290at 3381.580 kb on + strand, within BWI76_RS16290at 3382.293 kb on - strandat 3382.358 kb on + strandat 3382.599 kb on + strandat 3382.606 kb on - strandat 3382.624 kb on - strandat 3382.666 kb on - strandat 3382.721 kb on + strand, within BWI76_RS16295at 3382.932 kb on - strand, within BWI76_RS16295at 3383.087 kb on - strand, within BWI76_RS16295at 3383.188 kb on - strand, within BWI76_RS16295at 3383.362 kb on - strand, within BWI76_RS16295

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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3,380,562 + BWI76_RS16285 0.50 -0.4
3,380,622 - BWI76_RS16285 0.54 +0.9
3,380,837 - BWI76_RS16285 0.69 -0.2
3,380,850 + BWI76_RS16285 0.69 -1.4
3,381,054 - BWI76_RS16285 0.83 +0.1
3,381,077 - BWI76_RS16285 0.85 +1.0
3,381,426 - -1.4
3,381,444 - BWI76_RS16290 0.11 -0.7
3,381,494 - BWI76_RS16290 0.15 -0.2
3,381,580 + BWI76_RS16290 0.24 -1.6
3,382,293 - +0.8
3,382,358 + -0.8
3,382,599 + -0.3
3,382,606 - +0.1
3,382,624 - -0.6
3,382,666 - -1.0
3,382,721 + BWI76_RS16295 0.11 +0.3
3,382,932 - BWI76_RS16295 0.25 -0.1
3,383,087 - BWI76_RS16295 0.34 +4.6
3,383,188 - BWI76_RS16295 0.41 +0.7
3,383,362 - BWI76_RS16295 0.52 +2.5

Or see this region's nucleotide sequence