Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07890

Experiment: Parafilmed volatile agar plate with no fungus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS07885 and BWI76_RS07890 overlap by 1 nucleotidesBWI76_RS07890 and BWI76_RS07895 overlap by 4 nucleotides BWI76_RS07885: BWI76_RS07885 - sugar ABC transporter permease, at 1,673,543 to 1,674,544 _RS07885 BWI76_RS07890: BWI76_RS07890 - putative ABC-type sugar transport system permease component, at 1,674,544 to 1,675,530 _RS07890 BWI76_RS07895: BWI76_RS07895 - sugar ABC transporter ATPase, at 1,675,527 to 1,677,080 _RS07895 Position (kb) 1674 1675 1676Strain fitness (log2 ratio) -1 0 1 2at 1673.680 kb on + strand, within BWI76_RS07885at 1673.754 kb on + strand, within BWI76_RS07885at 1673.928 kb on - strand, within BWI76_RS07885at 1674.113 kb on + strand, within BWI76_RS07885at 1674.667 kb on + strand, within BWI76_RS07890at 1674.667 kb on + strand, within BWI76_RS07890at 1674.667 kb on + strand, within BWI76_RS07890at 1674.675 kb on - strand, within BWI76_RS07890at 1674.675 kb on - strand, within BWI76_RS07890at 1674.897 kb on - strandat 1675.166 kb on - strand, within BWI76_RS07890at 1675.234 kb on - strand, within BWI76_RS07890at 1675.280 kb on - strand, within BWI76_RS07890at 1675.309 kb on + strand, within BWI76_RS07890at 1675.347 kb on + strand, within BWI76_RS07890at 1675.355 kb on - strand, within BWI76_RS07890at 1675.431 kb on + strand, within BWI76_RS07890at 1676.047 kb on - strand, within BWI76_RS07895at 1676.302 kb on + strand, within BWI76_RS07895at 1676.310 kb on - strand, within BWI76_RS07895at 1676.310 kb on - strand, within BWI76_RS07895at 1676.320 kb on - strand, within BWI76_RS07895

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
remove
1,673,680 + BWI76_RS07885 0.14 -0.6
1,673,754 + BWI76_RS07885 0.21 -0.5
1,673,928 - BWI76_RS07885 0.38 +0.6
1,674,113 + BWI76_RS07885 0.57 -0.8
1,674,667 + BWI76_RS07890 0.12 -0.3
1,674,667 + BWI76_RS07890 0.12 -0.0
1,674,667 + BWI76_RS07890 0.12 +0.4
1,674,675 - BWI76_RS07890 0.13 +0.2
1,674,675 - BWI76_RS07890 0.13 -0.8
1,674,897 - +1.1
1,675,166 - BWI76_RS07890 0.63 -0.2
1,675,234 - BWI76_RS07890 0.70 -0.4
1,675,280 - BWI76_RS07890 0.75 +0.6
1,675,309 + BWI76_RS07890 0.78 -0.3
1,675,347 + BWI76_RS07890 0.81 +2.7
1,675,355 - BWI76_RS07890 0.82 +2.7
1,675,431 + BWI76_RS07890 0.90 +0.1
1,676,047 - BWI76_RS07895 0.33 -0.3
1,676,302 + BWI76_RS07895 0.50 -0.1
1,676,310 - BWI76_RS07895 0.50 -0.9
1,676,310 - BWI76_RS07895 0.50 +0.0
1,676,320 - BWI76_RS07895 0.51 +0.2

Or see this region's nucleotide sequence