Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07845

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07840 and BWI76_RS07845 are separated by 121 nucleotidesBWI76_RS07845 and BWI76_RS07850 are separated by 145 nucleotides BWI76_RS07840: BWI76_RS07840 - inositol monophosphatase family protein, at 1,663,084 to 1,663,893 _RS07840 BWI76_RS07845: BWI76_RS07845 - LacI family transcriptional regulator, at 1,664,015 to 1,665,004 _RS07845 BWI76_RS07850: BWI76_RS07850 - putative cytosine deaminase-related metal-dependent hydrolase, at 1,665,150 to 1,666,388 _RS07850 Position (kb) 1664 1665 1666Strain fitness (log2 ratio) -1 0 1at 1663.016 kb on - strandat 1663.062 kb on + strandat 1663.379 kb on + strand, within BWI76_RS07840at 1663.392 kb on + strand, within BWI76_RS07840at 1663.521 kb on - strand, within BWI76_RS07840at 1663.652 kb on + strand, within BWI76_RS07840at 1664.429 kb on - strand, within BWI76_RS07845at 1664.872 kb on - strand, within BWI76_RS07845at 1664.928 kb on - strandat 1665.026 kb on - strandat 1665.090 kb on + strandat 1665.183 kb on - strandat 1665.221 kb on - strandat 1665.250 kb on - strandat 1665.323 kb on + strand, within BWI76_RS07850at 1665.432 kb on - strand, within BWI76_RS07850at 1665.631 kb on - strand, within BWI76_RS07850at 1665.681 kb on - strand, within BWI76_RS07850at 1665.762 kb on + strand, within BWI76_RS07850at 1665.921 kb on + strand, within BWI76_RS07850

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,663,016 - -0.0
1,663,062 + -0.3
1,663,379 + BWI76_RS07840 0.36 -0.1
1,663,392 + BWI76_RS07840 0.38 +0.7
1,663,521 - BWI76_RS07840 0.54 +0.5
1,663,652 + BWI76_RS07840 0.70 +0.8
1,664,429 - BWI76_RS07845 0.42 -0.8
1,664,872 - BWI76_RS07845 0.87 +1.0
1,664,928 - -1.1
1,665,026 - +0.5
1,665,090 + -0.1
1,665,183 - -0.3
1,665,221 - -0.4
1,665,250 - -0.5
1,665,323 + BWI76_RS07850 0.14 -1.1
1,665,432 - BWI76_RS07850 0.23 -0.3
1,665,631 - BWI76_RS07850 0.39 +0.0
1,665,681 - BWI76_RS07850 0.43 +1.6
1,665,762 + BWI76_RS07850 0.49 -0.7
1,665,921 + BWI76_RS07850 0.62 +0.5

Or see this region's nucleotide sequence