Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05585

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05580 and BWI76_RS05585 overlap by 20 nucleotidesBWI76_RS05585 and BWI76_RS05590 overlap by 8 nucleotides BWI76_RS05580: BWI76_RS05580 - group 1 glycosyl transferase, at 1,168,111 to 1,169,325 _RS05580 BWI76_RS05585: BWI76_RS05585 - family 2 glycosyl transferase, at 1,169,306 to 1,170,331 _RS05585 BWI76_RS05590: BWI76_RS05590 - hypothetical protein, at 1,170,324 to 1,171,706 _RS05590 Position (kb) 1169 1170 1171Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1168.425 kb on - strand, within BWI76_RS05580at 1168.549 kb on - strand, within BWI76_RS05580at 1168.808 kb on + strand, within BWI76_RS05580at 1168.918 kb on + strand, within BWI76_RS05580at 1168.978 kb on + strand, within BWI76_RS05580at 1168.998 kb on + strand, within BWI76_RS05580at 1169.078 kb on + strand, within BWI76_RS05580at 1169.114 kb on + strand, within BWI76_RS05580at 1169.122 kb on - strand, within BWI76_RS05580at 1169.151 kb on + strand, within BWI76_RS05580at 1169.151 kb on + strand, within BWI76_RS05580at 1169.159 kb on - strand, within BWI76_RS05580at 1169.180 kb on - strand, within BWI76_RS05580at 1169.188 kb on + strandat 1169.226 kb on + strandat 1169.234 kb on - strandat 1169.234 kb on - strandat 1169.235 kb on - strandat 1169.235 kb on - strandat 1169.239 kb on + strandat 1169.355 kb on - strandat 1169.356 kb on - strandat 1169.364 kb on - strandat 1169.374 kb on - strandat 1169.393 kb on + strandat 1169.395 kb on + strandat 1169.399 kb on - strandat 1169.401 kb on - strandat 1169.401 kb on - strandat 1169.401 kb on - strandat 1169.410 kb on - strand, within BWI76_RS05585at 1169.416 kb on - strand, within BWI76_RS05585at 1169.416 kb on - strand, within BWI76_RS05585at 1169.416 kb on - strand, within BWI76_RS05585at 1169.416 kb on - strand, within BWI76_RS05585at 1169.416 kb on - strand, within BWI76_RS05585at 1169.447 kb on + strand, within BWI76_RS05585at 1169.454 kb on - strand, within BWI76_RS05585at 1169.455 kb on - strand, within BWI76_RS05585at 1169.455 kb on - strand, within BWI76_RS05585at 1169.490 kb on - strand, within BWI76_RS05585at 1169.505 kb on + strand, within BWI76_RS05585at 1169.568 kb on + strand, within BWI76_RS05585at 1169.593 kb on - strand, within BWI76_RS05585at 1169.632 kb on + strand, within BWI76_RS05585at 1169.653 kb on + strand, within BWI76_RS05585at 1169.713 kb on + strand, within BWI76_RS05585at 1169.726 kb on - strand, within BWI76_RS05585at 1169.800 kb on - strand, within BWI76_RS05585at 1169.803 kb on + strand, within BWI76_RS05585at 1169.811 kb on - strand, within BWI76_RS05585at 1169.826 kb on - strand, within BWI76_RS05585at 1169.826 kb on - strand, within BWI76_RS05585at 1169.826 kb on - strand, within BWI76_RS05585at 1169.861 kb on + strand, within BWI76_RS05585at 1169.892 kb on + strand, within BWI76_RS05585at 1169.900 kb on - strand, within BWI76_RS05585at 1169.963 kb on - strand, within BWI76_RS05585at 1170.022 kb on - strand, within BWI76_RS05585at 1170.109 kb on + strand, within BWI76_RS05585at 1170.228 kb on + strand, within BWI76_RS05585at 1170.228 kb on + strand, within BWI76_RS05585at 1170.236 kb on - strandat 1170.275 kb on + strandat 1170.438 kb on + strandat 1170.440 kb on + strandat 1170.448 kb on - strandat 1170.448 kb on - strandat 1170.490 kb on + strand, within BWI76_RS05590at 1170.490 kb on + strand, within BWI76_RS05590at 1170.490 kb on + strand, within BWI76_RS05590at 1170.498 kb on - strand, within BWI76_RS05590at 1170.516 kb on + strand, within BWI76_RS05590at 1170.524 kb on - strand, within BWI76_RS05590at 1170.545 kb on - strand, within BWI76_RS05590at 1170.571 kb on - strand, within BWI76_RS05590at 1170.571 kb on - strand, within BWI76_RS05590at 1170.571 kb on - strand, within BWI76_RS05590at 1170.653 kb on + strand, within BWI76_RS05590at 1170.669 kb on + strand, within BWI76_RS05590at 1170.715 kb on - strand, within BWI76_RS05590at 1170.996 kb on + strand, within BWI76_RS05590at 1171.020 kb on - strand, within BWI76_RS05590at 1171.020 kb on - strand, within BWI76_RS05590at 1171.165 kb on - strand, within BWI76_RS05590

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,168,425 - BWI76_RS05580 0.26 +0.3
1,168,549 - BWI76_RS05580 0.36 -0.4
1,168,808 + BWI76_RS05580 0.57 +4.1
1,168,918 + BWI76_RS05580 0.66 +0.3
1,168,978 + BWI76_RS05580 0.71 +3.7
1,168,998 + BWI76_RS05580 0.73 -1.0
1,169,078 + BWI76_RS05580 0.80 -0.4
1,169,114 + BWI76_RS05580 0.83 +0.0
1,169,122 - BWI76_RS05580 0.83 -0.4
1,169,151 + BWI76_RS05580 0.86 -1.0
1,169,151 + BWI76_RS05580 0.86 +0.3
1,169,159 - BWI76_RS05580 0.86 +1.1
1,169,180 - BWI76_RS05580 0.88 -0.2
1,169,188 + +3.0
1,169,226 + +0.6
1,169,234 - -0.6
1,169,234 - +3.8
1,169,235 - +1.5
1,169,235 - -0.7
1,169,239 + -1.4
1,169,355 - +0.8
1,169,356 - -1.7
1,169,364 - -1.2
1,169,374 - -0.0
1,169,393 + +1.6
1,169,395 + +0.1
1,169,399 - +0.0
1,169,401 - -0.8
1,169,401 - -0.2
1,169,401 - -0.5
1,169,410 - BWI76_RS05585 0.10 +1.0
1,169,416 - BWI76_RS05585 0.11 +0.4
1,169,416 - BWI76_RS05585 0.11 -0.3
1,169,416 - BWI76_RS05585 0.11 -0.1
1,169,416 - BWI76_RS05585 0.11 +0.9
1,169,416 - BWI76_RS05585 0.11 +0.3
1,169,447 + BWI76_RS05585 0.14 +1.6
1,169,454 - BWI76_RS05585 0.14 +0.2
1,169,455 - BWI76_RS05585 0.15 -0.7
1,169,455 - BWI76_RS05585 0.15 +0.8
1,169,490 - BWI76_RS05585 0.18 +0.8
1,169,505 + BWI76_RS05585 0.19 +0.6
1,169,568 + BWI76_RS05585 0.26 +0.5
1,169,593 - BWI76_RS05585 0.28 +1.0
1,169,632 + BWI76_RS05585 0.32 -0.1
1,169,653 + BWI76_RS05585 0.34 -0.3
1,169,713 + BWI76_RS05585 0.40 -0.0
1,169,726 - BWI76_RS05585 0.41 -1.3
1,169,800 - BWI76_RS05585 0.48 +0.7
1,169,803 + BWI76_RS05585 0.48 +1.5
1,169,811 - BWI76_RS05585 0.49 +0.4
1,169,826 - BWI76_RS05585 0.51 -0.4
1,169,826 - BWI76_RS05585 0.51 -0.6
1,169,826 - BWI76_RS05585 0.51 +0.4
1,169,861 + BWI76_RS05585 0.54 +0.3
1,169,892 + BWI76_RS05585 0.57 +0.3
1,169,900 - BWI76_RS05585 0.58 +0.1
1,169,963 - BWI76_RS05585 0.64 +1.0
1,170,022 - BWI76_RS05585 0.70 -1.0
1,170,109 + BWI76_RS05585 0.78 -0.0
1,170,228 + BWI76_RS05585 0.90 +0.9
1,170,228 + BWI76_RS05585 0.90 +1.0
1,170,236 - +0.9
1,170,275 + -0.5
1,170,438 + +0.0
1,170,440 + +0.8
1,170,448 - -0.5
1,170,448 - +0.4
1,170,490 + BWI76_RS05590 0.12 +0.3
1,170,490 + BWI76_RS05590 0.12 +1.2
1,170,490 + BWI76_RS05590 0.12 -1.8
1,170,498 - BWI76_RS05590 0.13 +0.1
1,170,516 + BWI76_RS05590 0.14 +0.0
1,170,524 - BWI76_RS05590 0.14 -0.5
1,170,545 - BWI76_RS05590 0.16 +1.1
1,170,571 - BWI76_RS05590 0.18 -0.8
1,170,571 - BWI76_RS05590 0.18 +0.2
1,170,571 - BWI76_RS05590 0.18 +1.2
1,170,653 + BWI76_RS05590 0.24 +0.1
1,170,669 + BWI76_RS05590 0.25 -0.7
1,170,715 - BWI76_RS05590 0.28 +0.4
1,170,996 + BWI76_RS05590 0.49 -0.2
1,171,020 - BWI76_RS05590 0.50 +0.4
1,171,020 - BWI76_RS05590 0.50 +2.5
1,171,165 - BWI76_RS05590 0.61 +0.3

Or see this region's nucleotide sequence