Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26085 and BWI76_RS26090 are separated by 54 nucleotides BWI76_RS26090 and BWI76_RS26095 are separated by 19 nucleotides BWI76_RS26095 and BWI76_RS26100 are separated by 10 nucleotides BWI76_RS26100 and BWI76_RS26105 overlap by 92 nucleotides BWI76_RS26105 and BWI76_RS26110 overlap by 11 nucleotides BWI76_RS26110 and BWI76_RS26115 overlap by 11 nucleotides
BWI76_RS26085: BWI76_RS26085 - 3-dehydroquinate synthase, at 5,390,178 to 5,391,272
_RS26085
BWI76_RS26090: BWI76_RS26090 - shikimate kinase, at 5,391,327 to 5,391,848
_RS26090
BWI76_RS26095: BWI76_RS26095 - shikimate kinase, at 5,391,868 to 5,392,106
_RS26095
BWI76_RS26100: BWI76_RS26100 - DNA transporter HofQ, at 5,392,117 to 5,393,358
_RS26100
BWI76_RS26105: BWI76_RS26105 - hypothetical protein, at 5,393,267 to 5,393,674
_RS26105
BWI76_RS26110: BWI76_RS26110 - hypothetical protein, at 5,393,664 to 5,394,104
_RS26110
BWI76_RS26115: BWI76_RS26115 - hypothetical protein, at 5,394,094 to 5,394,627
_RS26115
Position (kb) 5392
5393
5394 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5391.138 kb on - strand, within BWI76_RS26085 at 5391.913 kb on - strand, within BWI76_RS26095 at 5391.929 kb on - strand, within BWI76_RS26095 at 5392.235 kb on - strand at 5392.260 kb on + strand, within BWI76_RS26100 at 5392.287 kb on - strand, within BWI76_RS26100 at 5392.447 kb on + strand, within BWI76_RS26100 at 5392.460 kb on + strand, within BWI76_RS26100 at 5392.696 kb on + strand, within BWI76_RS26100 at 5392.704 kb on - strand, within BWI76_RS26100 at 5393.007 kb on - strand, within BWI76_RS26100 at 5393.091 kb on + strand, within BWI76_RS26100 at 5393.099 kb on - strand, within BWI76_RS26100 at 5393.136 kb on - strand, within BWI76_RS26100 at 5393.172 kb on + strand, within BWI76_RS26100 at 5393.196 kb on + strand, within BWI76_RS26100 at 5393.465 kb on - strand, within BWI76_RS26105 at 5393.465 kb on - strand, within BWI76_RS26105 at 5393.515 kb on - strand, within BWI76_RS26105 at 5393.515 kb on - strand, within BWI76_RS26105 at 5393.967 kb on - strand, within BWI76_RS26110 at 5394.013 kb on - strand, within BWI76_RS26110 at 5394.016 kb on + strand, within BWI76_RS26110 at 5394.025 kb on + strand, within BWI76_RS26110 at 5394.175 kb on - strand, within BWI76_RS26115 at 5394.258 kb on + strand, within BWI76_RS26115 at 5394.288 kb on + strand, within BWI76_RS26115
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X remove 5,391,138 - BWI76_RS26085 0.88 +1.1 5,391,913 - BWI76_RS26095 0.19 +1.9 5,391,929 - BWI76_RS26095 0.26 -1.8 5,392,235 - -0.3 5,392,260 + BWI76_RS26100 0.12 +0.2 5,392,287 - BWI76_RS26100 0.14 +0.5 5,392,447 + BWI76_RS26100 0.27 +0.5 5,392,460 + BWI76_RS26100 0.28 +0.7 5,392,696 + BWI76_RS26100 0.47 +0.7 5,392,704 - BWI76_RS26100 0.47 +0.4 5,393,007 - BWI76_RS26100 0.72 +0.4 5,393,091 + BWI76_RS26100 0.78 +0.1 5,393,099 - BWI76_RS26100 0.79 +0.3 5,393,136 - BWI76_RS26100 0.82 +0.3 5,393,172 + BWI76_RS26100 0.85 +0.5 5,393,196 + BWI76_RS26100 0.87 +0.5 5,393,465 - BWI76_RS26105 0.49 +0.3 5,393,465 - BWI76_RS26105 0.49 +0.5 5,393,515 - BWI76_RS26105 0.61 +0.1 5,393,515 - BWI76_RS26105 0.61 +0.4 5,393,967 - BWI76_RS26110 0.69 +0.5 5,394,013 - BWI76_RS26110 0.79 +0.6 5,394,016 + BWI76_RS26110 0.80 +0.7 5,394,025 + BWI76_RS26110 0.82 +0.0 5,394,175 - BWI76_RS26115 0.15 -0.0 5,394,258 + BWI76_RS26115 0.31 -0.7 5,394,288 + BWI76_RS26115 0.36 -0.0
Or see this region's nucleotide sequence