Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02200 and BWI76_RS02205 are separated by 196 nucleotides BWI76_RS02205 and BWI76_RS02210 overlap by 4 nucleotides BWI76_RS02210 and BWI76_RS02215 overlap by 8 nucleotides
BWI76_RS02200: BWI76_RS02200 - phosphonate C-P lyase system protein PhnL, at 455,878 to 456,564
_RS02200
BWI76_RS02205: BWI76_RS02205 - phosphonate C-P lyase system protein PhnK, at 456,761 to 457,519
_RS02205
BWI76_RS02210: BWI76_RS02210 - carbon-phosphorus lyase complex subunit PhnJ, at 457,516 to 458,364
_RS02210
BWI76_RS02215: BWI76_RS02215 - carbon-phosphorus lyase complex subunit PhnI, at 458,357 to 459,421
_RS02215
Position (kb) 457
458
459 Strain fitness (log2 ratio) -2
-1
0
1
2 at 456.648 kb on - strand at 456.716 kb on + strand at 456.724 kb on - strand at 456.747 kb on + strand at 456.795 kb on + strand at 456.795 kb on + strand at 456.803 kb on - strand at 456.931 kb on + strand, within BWI76_RS02205 at 457.034 kb on + strand, within BWI76_RS02205 at 457.064 kb on - strand, within BWI76_RS02205 at 457.074 kb on - strand, within BWI76_RS02205 at 457.164 kb on + strand, within BWI76_RS02205 at 457.164 kb on + strand, within BWI76_RS02205 at 457.194 kb on - strand, within BWI76_RS02205 at 457.436 kb on + strand, within BWI76_RS02205 at 457.473 kb on + strand at 457.637 kb on + strand, within BWI76_RS02210 at 457.654 kb on + strand, within BWI76_RS02210 at 457.701 kb on + strand at 457.718 kb on + strand, within BWI76_RS02210 at 457.752 kb on + strand, within BWI76_RS02210 at 457.760 kb on - strand, within BWI76_RS02210 at 457.826 kb on + strand, within BWI76_RS02210 at 457.854 kb on - strand, within BWI76_RS02210 at 457.854 kb on - strand, within BWI76_RS02210 at 457.854 kb on - strand, within BWI76_RS02210 at 457.925 kb on - strand, within BWI76_RS02210 at 457.974 kb on + strand, within BWI76_RS02210 at 458.223 kb on - strand, within BWI76_RS02210 at 458.385 kb on + strand at 458.385 kb on + strand at 458.393 kb on - strand at 458.393 kb on - strand at 458.393 kb on - strand at 458.523 kb on - strand, within BWI76_RS02215 at 458.601 kb on - strand, within BWI76_RS02215 at 458.670 kb on + strand, within BWI76_RS02215 at 458.775 kb on - strand, within BWI76_RS02215 at 458.788 kb on + strand, within BWI76_RS02215 at 458.793 kb on + strand, within BWI76_RS02215 at 458.796 kb on - strand, within BWI76_RS02215 at 458.796 kb on - strand, within BWI76_RS02215 at 458.801 kb on - strand, within BWI76_RS02215 at 458.801 kb on - strand, within BWI76_RS02215 at 458.864 kb on + strand, within BWI76_RS02215 at 458.872 kb on - strand, within BWI76_RS02215 at 459.224 kb on - strand, within BWI76_RS02215
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X remove 456,648 - -0.7 456,716 + -0.3 456,724 - +0.5 456,747 + +0.1 456,795 + +0.8 456,795 + -0.8 456,803 - +0.3 456,931 + BWI76_RS02205 0.22 -2.3 457,034 + BWI76_RS02205 0.36 +0.4 457,064 - BWI76_RS02205 0.40 -0.1 457,074 - BWI76_RS02205 0.41 -0.0 457,164 + BWI76_RS02205 0.53 -0.4 457,164 + BWI76_RS02205 0.53 +0.1 457,194 - BWI76_RS02205 0.57 -0.4 457,436 + BWI76_RS02205 0.89 -0.1 457,473 + -0.6 457,637 + BWI76_RS02210 0.14 -0.4 457,654 + BWI76_RS02210 0.16 +0.2 457,701 + +2.6 457,718 + BWI76_RS02210 0.24 -0.3 457,752 + BWI76_RS02210 0.28 +1.2 457,760 - BWI76_RS02210 0.29 +0.9 457,826 + BWI76_RS02210 0.37 +0.6 457,854 - BWI76_RS02210 0.40 +1.1 457,854 - BWI76_RS02210 0.40 +1.0 457,854 - BWI76_RS02210 0.40 -0.9 457,925 - BWI76_RS02210 0.48 +1.1 457,974 + BWI76_RS02210 0.54 +0.4 458,223 - BWI76_RS02210 0.83 +0.7 458,385 + -0.4 458,385 + +0.6 458,393 - +0.9 458,393 - +0.4 458,393 - +0.2 458,523 - BWI76_RS02215 0.16 +0.2 458,601 - BWI76_RS02215 0.23 -0.5 458,670 + BWI76_RS02215 0.29 -0.3 458,775 - BWI76_RS02215 0.39 +0.3 458,788 + BWI76_RS02215 0.40 -0.2 458,793 + BWI76_RS02215 0.41 -0.2 458,796 - BWI76_RS02215 0.41 -0.1 458,796 - BWI76_RS02215 0.41 +0.3 458,801 - BWI76_RS02215 0.42 -0.1 458,801 - BWI76_RS02215 0.42 +0.2 458,864 + BWI76_RS02215 0.48 -0.0 458,872 - BWI76_RS02215 0.48 +0.1 459,224 - BWI76_RS02215 0.81 +0.1
Or see this region's nucleotide sequence