Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16565 and BWI76_RS16570 are separated by 19 nucleotides BWI76_RS16570 and BWI76_RS16575 are separated by 71 nucleotides BWI76_RS16575 and BWI76_RS16580 overlap by 1 nucleotides
BWI76_RS16565: BWI76_RS16565 - YciE/YciF family protein, at 3,431,165 to 3,431,671
_RS16565
BWI76_RS16570: BWI76_RS16570 - catalase, at 3,431,691 to 3,432,563
_RS16570
BWI76_RS16575: BWI76_RS16575 - cytochrome ubiquinol oxidase subunit I, at 3,432,635 to 3,434,038
_RS16575
BWI76_RS16580: BWI76_RS16580 - ubiquinol oxidase subunit II, at 3,434,038 to 3,435,048
_RS16580
Position (kb)
3432
3433
3434
3435 Strain fitness (log2 ratio)
-1
0
1
2 at 3431.648 kb on + strand at 3431.712 kb on + strand at 3431.783 kb on + strand, within BWI76_RS16570 at 3431.792 kb on - strand, within BWI76_RS16570 at 3431.825 kb on + strand, within BWI76_RS16570 at 3431.984 kb on - strand, within BWI76_RS16570 at 3432.079 kb on - strand, within BWI76_RS16570 at 3432.204 kb on - strand, within BWI76_RS16570 at 3432.481 kb on - strand at 3432.481 kb on - strand at 3432.481 kb on - strand at 3432.609 kb on - strand at 3432.610 kb on + strand at 3432.659 kb on - strand at 3432.761 kb on - strand at 3432.876 kb on - strand, within BWI76_RS16575 at 3433.005 kb on + strand, within BWI76_RS16575 at 3433.136 kb on + strand, within BWI76_RS16575 at 3433.334 kb on - strand at 3433.826 kb on - strand, within BWI76_RS16575 at 3433.837 kb on + strand, within BWI76_RS16575 at 3433.885 kb on + strand, within BWI76_RS16575 at 3433.893 kb on - strand, within BWI76_RS16575 at 3434.224 kb on - strand, within BWI76_RS16580 at 3434.417 kb on + strand, within BWI76_RS16580 at 3434.425 kb on - strand, within BWI76_RS16580 at 3434.464 kb on - strand, within BWI76_RS16580 at 3434.785 kb on - strand, within BWI76_RS16580 at 3434.796 kb on + strand, within BWI76_RS16580 at 3434.990 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X remove 3,431,648 + -0.5 3,431,712 + +0.7 3,431,783 + BWI76_RS16570 0.11 +0.5 3,431,792 - BWI76_RS16570 0.12 -0.2 3,431,825 + BWI76_RS16570 0.15 -0.3 3,431,984 - BWI76_RS16570 0.34 +0.2 3,432,079 - BWI76_RS16570 0.44 -0.0 3,432,204 - BWI76_RS16570 0.59 -0.8 3,432,481 - -0.4 3,432,481 - -0.3 3,432,481 - -0.1 3,432,609 - +0.2 3,432,610 + -0.2 3,432,659 - +0.4 3,432,761 - -0.1 3,432,876 - BWI76_RS16575 0.17 +0.2 3,433,005 + BWI76_RS16575 0.26 -0.6 3,433,136 + BWI76_RS16575 0.36 +0.8 3,433,334 - +2.3 3,433,826 - BWI76_RS16575 0.85 +2.3 3,433,837 + BWI76_RS16575 0.86 +0.4 3,433,885 + BWI76_RS16575 0.89 +0.3 3,433,893 - BWI76_RS16575 0.90 +0.4 3,434,224 - BWI76_RS16580 0.18 +0.1 3,434,417 + BWI76_RS16580 0.37 -0.3 3,434,425 - BWI76_RS16580 0.38 -0.2 3,434,464 - BWI76_RS16580 0.42 +0.3 3,434,785 - BWI76_RS16580 0.74 -0.5 3,434,796 + BWI76_RS16580 0.75 +0.4 3,434,990 - +0.1
Or see this region's nucleotide sequence