Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11015

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS11005 and BWI76_RS11010 are separated by 229 nucleotidesBWI76_RS11010 and BWI76_RS11015 are separated by 9 nucleotidesBWI76_RS11015 and BWI76_RS11020 are separated by 2 nucleotides BWI76_RS11005: BWI76_RS11005 - MFS transporter, at 2,320,908 to 2,322,116 _RS11005 BWI76_RS11010: BWI76_RS11010 - 30S ribosomal protein S5 alanine N-acetyltransferase, at 2,322,346 to 2,322,930 _RS11010 BWI76_RS11015: BWI76_RS11015 - hypothetical protein, at 2,322,940 to 2,323,587 _RS11015 BWI76_RS11020: BWI76_RS11020 - oxidoreductase family, NAD-binding protein, at 2,323,590 to 2,324,513 _RS11020 Position (kb) 2322 2323 2324Strain fitness (log2 ratio) -1 0 1at 2321.965 kb on - strand, within BWI76_RS11005at 2322.060 kb on + strandat 2322.119 kb on - strandat 2322.155 kb on - strandat 2322.298 kb on + strandat 2322.307 kb on - strandat 2322.512 kb on - strand, within BWI76_RS11010at 2322.708 kb on - strand, within BWI76_RS11010at 2322.751 kb on + strand, within BWI76_RS11010at 2323.022 kb on - strand, within BWI76_RS11015at 2323.042 kb on - strand, within BWI76_RS11015at 2323.186 kb on - strand, within BWI76_RS11015at 2323.889 kb on + strand, within BWI76_RS11020at 2324.161 kb on - strand, within BWI76_RS11020at 2324.368 kb on + strand, within BWI76_RS11020at 2324.376 kb on - strand, within BWI76_RS11020at 2324.376 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
remove
2,321,965 - BWI76_RS11005 0.87 -0.1
2,322,060 + +0.0
2,322,119 - -0.6
2,322,155 - -0.5
2,322,298 + -0.1
2,322,307 - -0.6
2,322,512 - BWI76_RS11010 0.28 +0.1
2,322,708 - BWI76_RS11010 0.62 +0.1
2,322,751 + BWI76_RS11010 0.69 -0.0
2,323,022 - BWI76_RS11015 0.13 -1.5
2,323,042 - BWI76_RS11015 0.16 -1.5
2,323,186 - BWI76_RS11015 0.38 -0.6
2,323,889 + BWI76_RS11020 0.32 +0.2
2,324,161 - BWI76_RS11020 0.62 +0.5
2,324,368 + BWI76_RS11020 0.84 -0.6
2,324,376 - BWI76_RS11020 0.85 -0.0
2,324,376 - +0.9

Or see this region's nucleotide sequence