Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09705 and BWI76_RS09710 overlap by 1 nucleotides BWI76_RS09710 and BWI76_RS09715 are separated by 12 nucleotides BWI76_RS09715 and BWI76_RS09720 are separated by 17 nucleotides BWI76_RS09720 and BWI76_RS09725 are separated by 122 nucleotides
BWI76_RS09705: BWI76_RS09705 - transketolase, at 2,034,570 to 2,035,481
_RS09705
BWI76_RS09710: BWI76_RS09710 - transketolase, at 2,035,481 to 2,036,278
_RS09710
BWI76_RS09715: BWI76_RS09715 - hypothetical protein, at 2,036,291 to 2,037,556
_RS09715
BWI76_RS09720: BWI76_RS09720 - PTS ascorbate transporter subunit IIB, at 2,037,574 to 2,037,849
_RS09720
BWI76_RS09725: BWI76_RS09725 - MurR/RpiR family transcriptional regulator, at 2,037,972 to 2,038,829
_RS09725
Position (kb)
2036
2037
2038 Strain fitness (log2 ratio)
-1
0
1 at 2035.382 kb on + strand, within BWI76_RS09705 at 2035.448 kb on + strand at 2035.605 kb on + strand, within BWI76_RS09710 at 2035.965 kb on + strand, within BWI76_RS09710 at 2036.065 kb on + strand, within BWI76_RS09710 at 2036.263 kb on - strand at 2036.407 kb on + strand at 2036.608 kb on - strand, within BWI76_RS09715 at 2036.608 kb on - strand, within BWI76_RS09715 at 2036.663 kb on - strand, within BWI76_RS09715 at 2036.895 kb on + strand, within BWI76_RS09715 at 2036.998 kb on - strand, within BWI76_RS09715 at 2037.174 kb on + strand, within BWI76_RS09715 at 2037.228 kb on - strand, within BWI76_RS09715 at 2037.605 kb on + strand, within BWI76_RS09720 at 2037.623 kb on - strand, within BWI76_RS09720 at 2037.628 kb on - strand, within BWI76_RS09720 at 2037.728 kb on + strand, within BWI76_RS09720 at 2037.855 kb on + strand at 2038.181 kb on + strand, within BWI76_RS09725 at 2038.544 kb on + strand, within BWI76_RS09725
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X remove 2,035,382 + BWI76_RS09705 0.89 +0.1 2,035,448 + +0.1 2,035,605 + BWI76_RS09710 0.16 +0.0 2,035,965 + BWI76_RS09710 0.61 -0.6 2,036,065 + BWI76_RS09710 0.73 -0.0 2,036,263 - -0.5 2,036,407 + +0.3 2,036,608 - BWI76_RS09715 0.25 +0.2 2,036,608 - BWI76_RS09715 0.25 -0.0 2,036,663 - BWI76_RS09715 0.29 +0.9 2,036,895 + BWI76_RS09715 0.48 +0.2 2,036,998 - BWI76_RS09715 0.56 +0.5 2,037,174 + BWI76_RS09715 0.70 -0.0 2,037,228 - BWI76_RS09715 0.74 +0.8 2,037,605 + BWI76_RS09720 0.11 -0.2 2,037,623 - BWI76_RS09720 0.18 -0.8 2,037,628 - BWI76_RS09720 0.20 +0.3 2,037,728 + BWI76_RS09720 0.56 -0.8 2,037,855 + +0.5 2,038,181 + BWI76_RS09725 0.24 -0.5 2,038,544 + BWI76_RS09725 0.67 +0.4
Or see this region's nucleotide sequence