Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04420 and BWI76_RS04425 are separated by 15 nucleotides BWI76_RS04425 and BWI76_RS04430 are separated by 160 nucleotides
BWI76_RS04420: BWI76_RS04420 - oxaloacetate decarboxylase, at 912,522 to 914,288
_RS04420
BWI76_RS04425: BWI76_RS04425 - oxaloacetate decarboxylase subunit gamma, at 914,304 to 914,555
_RS04425
BWI76_RS04430: BWI76_RS04430 - citrate carrier protein, at 914,716 to 916,056
_RS04430
Position (kb) 914
915 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 913.533 kb on - strand, within BWI76_RS04420 at 913.647 kb on - strand, within BWI76_RS04420 at 913.825 kb on - strand, within BWI76_RS04420 at 913.835 kb on - strand, within BWI76_RS04420 at 913.863 kb on - strand, within BWI76_RS04420 at 914.101 kb on + strand at 914.511 kb on + strand, within BWI76_RS04425 at 914.540 kb on - strand at 914.630 kb on - strand at 914.820 kb on - strand at 914.820 kb on - strand at 914.836 kb on - strand at 914.861 kb on + strand, within BWI76_RS04430 at 914.866 kb on - strand, within BWI76_RS04430 at 914.868 kb on + strand, within BWI76_RS04430 at 915.014 kb on - strand, within BWI76_RS04430 at 915.019 kb on - strand, within BWI76_RS04430 at 915.121 kb on + strand, within BWI76_RS04430 at 915.129 kb on - strand, within BWI76_RS04430 at 915.136 kb on + strand, within BWI76_RS04430 at 915.214 kb on - strand, within BWI76_RS04430 at 915.244 kb on + strand at 915.324 kb on + strand, within BWI76_RS04430 at 915.342 kb on - strand, within BWI76_RS04430 at 915.389 kb on + strand, within BWI76_RS04430 at 915.397 kb on - strand, within BWI76_RS04430 at 915.400 kb on + strand, within BWI76_RS04430 at 915.406 kb on + strand, within BWI76_RS04430 at 915.411 kb on + strand at 915.423 kb on + strand, within BWI76_RS04430 at 915.423 kb on + strand, within BWI76_RS04430 at 915.425 kb on + strand, within BWI76_RS04430 at 915.430 kb on + strand, within BWI76_RS04430 at 915.431 kb on - strand, within BWI76_RS04430 at 915.431 kb on - strand, within BWI76_RS04430 at 915.438 kb on - strand, within BWI76_RS04430 at 915.478 kb on + strand, within BWI76_RS04430 at 915.497 kb on - strand, within BWI76_RS04430 at 915.497 kb on - strand, within BWI76_RS04430 at 915.531 kb on - strand, within BWI76_RS04430 at 915.532 kb on - strand, within BWI76_RS04430 at 915.532 kb on - strand, within BWI76_RS04430 at 915.534 kb on - strand, within BWI76_RS04430
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X remove 913,533 - BWI76_RS04420 0.57 -1.3 913,647 - BWI76_RS04420 0.64 -1.9 913,825 - BWI76_RS04420 0.74 -0.3 913,835 - BWI76_RS04420 0.74 -0.5 913,863 - BWI76_RS04420 0.76 -1.2 914,101 + -1.0 914,511 + BWI76_RS04425 0.82 +0.3 914,540 - -0.8 914,630 - -1.5 914,820 - -1.5 914,820 - +0.4 914,836 - -0.1 914,861 + BWI76_RS04430 0.11 -0.3 914,866 - BWI76_RS04430 0.11 -0.4 914,868 + BWI76_RS04430 0.11 -2.5 915,014 - BWI76_RS04430 0.22 +0.5 915,019 - BWI76_RS04430 0.23 -0.8 915,121 + BWI76_RS04430 0.30 +0.2 915,129 - BWI76_RS04430 0.31 -0.3 915,136 + BWI76_RS04430 0.31 +0.1 915,214 - BWI76_RS04430 0.37 +0.8 915,244 + +4.2 915,324 + BWI76_RS04430 0.45 -0.0 915,342 - BWI76_RS04430 0.47 -1.0 915,389 + BWI76_RS04430 0.50 +0.8 915,397 - BWI76_RS04430 0.51 +0.9 915,400 + BWI76_RS04430 0.51 -1.1 915,406 + BWI76_RS04430 0.51 -0.0 915,411 + -1.1 915,423 + BWI76_RS04430 0.53 -0.6 915,423 + BWI76_RS04430 0.53 +0.0 915,425 + BWI76_RS04430 0.53 -1.5 915,430 + BWI76_RS04430 0.53 +0.9 915,431 - BWI76_RS04430 0.53 -0.2 915,431 - BWI76_RS04430 0.53 +0.1 915,438 - BWI76_RS04430 0.54 -0.0 915,478 + BWI76_RS04430 0.57 -0.1 915,497 - BWI76_RS04430 0.58 -0.1 915,497 - BWI76_RS04430 0.58 -0.4 915,531 - BWI76_RS04430 0.61 -0.1 915,532 - BWI76_RS04430 0.61 +0.3 915,532 - BWI76_RS04430 0.61 -0.2 915,534 - BWI76_RS04430 0.61 +0.2
Or see this region's nucleotide sequence