Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00990 and BWI76_RS00995 are separated by 100 nucleotides BWI76_RS00995 and BWI76_RS01000 are separated by 52 nucleotides BWI76_RS01000 and BWI76_RS01005 are separated by 194 nucleotides
BWI76_RS00990: BWI76_RS00990 - ketol-acid reductoisomerase, at 202,804 to 204,279
_RS00990
BWI76_RS00995: BWI76_RS00995 - peptidyl-prolyl cis-trans isomerase, at 204,380 to 204,661
_RS00995
BWI76_RS01000: BWI76_RS01000 - peptidyl-prolyl cis-trans isomerase, at 204,714 to 204,995
_RS01000
BWI76_RS01005: BWI76_RS01005 - CarD family transcriptional regulator, at 205,190 to 205,894
_RS01005
Position (kb) 204
205 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 203.617 kb on - strand, within BWI76_RS00990 at 203.617 kb on - strand, within BWI76_RS00990 at 203.709 kb on + strand, within BWI76_RS00990 at 204.075 kb on - strand at 204.167 kb on + strand at 204.305 kb on + strand at 204.306 kb on + strand at 204.330 kb on + strand at 204.458 kb on + strand, within BWI76_RS00995 at 204.466 kb on - strand, within BWI76_RS00995 at 204.496 kb on - strand, within BWI76_RS00995 at 204.720 kb on - strand at 204.783 kb on - strand, within BWI76_RS01000 at 204.800 kb on - strand at 204.819 kb on + strand, within BWI76_RS01000 at 204.906 kb on + strand, within BWI76_RS01000 at 204.936 kb on - strand, within BWI76_RS01000 at 204.948 kb on + strand, within BWI76_RS01000 at 204.977 kb on - strand at 204.977 kb on - strand at 205.053 kb on + strand at 205.053 kb on + strand at 205.145 kb on + strand at 205.163 kb on + strand at 205.163 kb on + strand at 205.165 kb on + strand at 205.165 kb on + strand at 205.166 kb on - strand at 205.240 kb on + strand at 205.414 kb on + strand, within BWI76_RS01005 at 205.423 kb on - strand, within BWI76_RS01005 at 205.529 kb on + strand, within BWI76_RS01005 at 205.561 kb on - strand, within BWI76_RS01005 at 205.632 kb on - strand, within BWI76_RS01005
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X remove 203,617 - BWI76_RS00990 0.55 -1.0 203,617 - BWI76_RS00990 0.55 -0.1 203,709 + BWI76_RS00990 0.61 +0.5 204,075 - +1.0 204,167 + -0.3 204,305 + +0.1 204,306 + -0.9 204,330 + +0.0 204,458 + BWI76_RS00995 0.28 +1.2 204,466 - BWI76_RS00995 0.30 +0.0 204,496 - BWI76_RS00995 0.41 +0.2 204,720 - +0.4 204,783 - BWI76_RS01000 0.24 -0.6 204,800 - +1.8 204,819 + BWI76_RS01000 0.37 -3.2 204,906 + BWI76_RS01000 0.68 +0.5 204,936 - BWI76_RS01000 0.79 -0.6 204,948 + BWI76_RS01000 0.83 -0.0 204,977 - -1.2 204,977 - -0.3 205,053 + -0.1 205,053 + +0.2 205,145 + +0.2 205,163 + -0.1 205,163 + -0.4 205,165 + +0.8 205,165 + +0.1 205,166 - -0.4 205,240 + -0.8 205,414 + BWI76_RS01005 0.32 -0.1 205,423 - BWI76_RS01005 0.33 -0.0 205,529 + BWI76_RS01005 0.48 -0.2 205,561 - BWI76_RS01005 0.53 -0.1 205,632 - BWI76_RS01005 0.63 +0.6
Or see this region's nucleotide sequence