Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03580 and BWI76_RS03585 are separated by 15 nucleotides BWI76_RS03585 and BWI76_RS03590 are separated by 26 nucleotides BWI76_RS03590 and BWI76_RS03595 are separated by 53 nucleotides BWI76_RS03595 and BWI76_RS03600 are separated by 15 nucleotides BWI76_RS03600 and BWI76_RS03605 are separated by 17 nucleotides
BWI76_RS03580: BWI76_RS03580 - iron-containing alcohol dehydrogenase, at 742,866 to 744,008
_RS03580
BWI76_RS03585: BWI76_RS03585 - ethanolamine utilization protein EutN, at 744,024 to 744,281
_RS03585
BWI76_RS03590: BWI76_RS03590 - acetaldehyde dehydrogenase (acetylating), at 744,308 to 745,909
_RS03590
BWI76_RS03595: BWI76_RS03595 - ethanolamine utilization protein EutM, at 745,963 to 746,241
_RS03595
BWI76_RS03600: BWI76_RS03600 - BMC domain-containing protein, at 746,257 to 746,541
_RS03600
BWI76_RS03605: BWI76_RS03605 - BMC domain-containing protein, at 746,559 to 746,837
_RS03605
Position (kb) 744
745
746 Strain fitness (log2 ratio) -2
-1
0
1
2 at 743.655 kb on + strand, within BWI76_RS03580 at 743.685 kb on + strand, within BWI76_RS03580 at 743.858 kb on + strand, within BWI76_RS03580 at 744.070 kb on + strand, within BWI76_RS03585 at 744.070 kb on + strand, within BWI76_RS03585 at 744.070 kb on + strand, within BWI76_RS03585 at 744.120 kb on + strand, within BWI76_RS03585 at 744.617 kb on - strand, within BWI76_RS03590 at 744.653 kb on + strand, within BWI76_RS03590 at 744.653 kb on + strand, within BWI76_RS03590 at 744.658 kb on + strand, within BWI76_RS03590 at 744.779 kb on + strand, within BWI76_RS03590 at 744.787 kb on + strand, within BWI76_RS03590 at 744.937 kb on + strand, within BWI76_RS03590 at 744.984 kb on - strand, within BWI76_RS03590 at 745.253 kb on - strand, within BWI76_RS03590 at 745.306 kb on - strand, within BWI76_RS03590 at 745.306 kb on - strand, within BWI76_RS03590 at 745.354 kb on + strand, within BWI76_RS03590 at 745.362 kb on - strand, within BWI76_RS03590 at 745.450 kb on + strand, within BWI76_RS03590 at 745.869 kb on - strand at 745.883 kb on + strand at 746.034 kb on - strand, within BWI76_RS03595 at 746.173 kb on - strand, within BWI76_RS03595 at 746.505 kb on - strand, within BWI76_RS03600 at 746.523 kb on + strand at 746.557 kb on - strand at 746.557 kb on - strand at 746.695 kb on + strand, within BWI76_RS03605 at 746.725 kb on - strand, within BWI76_RS03605 at 746.769 kb on - strand, within BWI76_RS03605 at 746.819 kb on + strand at 746.819 kb on + strand at 746.827 kb on - strand at 746.827 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X remove 743,655 + BWI76_RS03580 0.69 -0.1 743,685 + BWI76_RS03580 0.72 -0.2 743,858 + BWI76_RS03580 0.87 -0.7 744,070 + BWI76_RS03585 0.18 +0.3 744,070 + BWI76_RS03585 0.18 +0.2 744,070 + BWI76_RS03585 0.18 +0.4 744,120 + BWI76_RS03585 0.37 +0.3 744,617 - BWI76_RS03590 0.19 +0.2 744,653 + BWI76_RS03590 0.22 -0.1 744,653 + BWI76_RS03590 0.22 -0.4 744,658 + BWI76_RS03590 0.22 +0.2 744,779 + BWI76_RS03590 0.29 +0.0 744,787 + BWI76_RS03590 0.30 +0.1 744,937 + BWI76_RS03590 0.39 -0.4 744,984 - BWI76_RS03590 0.42 +0.0 745,253 - BWI76_RS03590 0.59 -0.8 745,306 - BWI76_RS03590 0.62 -0.2 745,306 - BWI76_RS03590 0.62 +0.2 745,354 + BWI76_RS03590 0.65 +0.5 745,362 - BWI76_RS03590 0.66 -0.4 745,450 + BWI76_RS03590 0.71 +0.3 745,869 - +0.2 745,883 + +0.0 746,034 - BWI76_RS03595 0.25 -2.7 746,173 - BWI76_RS03595 0.75 -1.5 746,505 - BWI76_RS03600 0.87 -0.7 746,523 + -0.5 746,557 - +0.4 746,557 - +2.1 746,695 + BWI76_RS03605 0.49 -0.9 746,725 - BWI76_RS03605 0.59 -0.1 746,769 - BWI76_RS03605 0.75 -0.5 746,819 + +0.3 746,819 + +0.4 746,827 - -0.5 746,827 - +0.7
Or see this region's nucleotide sequence