Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24070

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS24060 and BWI76_RS24065 are separated by 94 nucleotidesBWI76_RS24065 and BWI76_RS24070 are separated by 90 nucleotidesBWI76_RS24070 and BWI76_RS24075 are separated by 20 nucleotides BWI76_RS24060: BWI76_RS24060 - SprT family protein, at 5,021,183 to 5,021,683 _RS24060 BWI76_RS24065: BWI76_RS24065 - deoxyribonuclease I, at 5,021,778 to 5,022,485 _RS24065 BWI76_RS24070: BWI76_RS24070 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 5,022,576 to 5,023,307 _RS24070 BWI76_RS24075: BWI76_RS24075 - glutathione synthase, at 5,023,328 to 5,024,275 _RS24075 Position (kb) 5022 5023 5024Strain fitness (log2 ratio) -1 0 1at 5021.769 kb on + strandat 5021.875 kb on - strand, within BWI76_RS24065at 5022.161 kb on + strand, within BWI76_RS24065at 5022.161 kb on + strand, within BWI76_RS24065at 5022.393 kb on + strand, within BWI76_RS24065at 5022.448 kb on - strandat 5022.678 kb on + strand, within BWI76_RS24070at 5022.678 kb on + strand, within BWI76_RS24070at 5022.827 kb on + strand, within BWI76_RS24070at 5022.891 kb on - strand, within BWI76_RS24070at 5023.064 kb on + strand, within BWI76_RS24070at 5023.265 kb on - strandat 5023.310 kb on + strandat 5023.390 kb on - strandat 5023.483 kb on - strand, within BWI76_RS24075at 5023.757 kb on - strand, within BWI76_RS24075at 5023.773 kb on - strand, within BWI76_RS24075at 5023.816 kb on - strand, within BWI76_RS24075at 5023.821 kb on - strand, within BWI76_RS24075at 5023.916 kb on + strand, within BWI76_RS24075at 5024.250 kb on + strandat 5024.258 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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5,021,769 + -0.1
5,021,875 - BWI76_RS24065 0.14 -0.8
5,022,161 + BWI76_RS24065 0.54 -0.2
5,022,161 + BWI76_RS24065 0.54 +0.3
5,022,393 + BWI76_RS24065 0.87 +0.1
5,022,448 - -0.6
5,022,678 + BWI76_RS24070 0.14 +0.4
5,022,678 + BWI76_RS24070 0.14 +1.4
5,022,827 + BWI76_RS24070 0.34 +1.3
5,022,891 - BWI76_RS24070 0.43 +0.2
5,023,064 + BWI76_RS24070 0.67 -0.4
5,023,265 - -0.0
5,023,310 + +0.9
5,023,390 - -0.6
5,023,483 - BWI76_RS24075 0.16 +0.7
5,023,757 - BWI76_RS24075 0.45 +0.9
5,023,773 - BWI76_RS24075 0.47 -0.6
5,023,816 - BWI76_RS24075 0.51 +0.4
5,023,821 - BWI76_RS24075 0.52 -0.2
5,023,916 + BWI76_RS24075 0.62 -0.2
5,024,250 + -0.0
5,024,258 - -0.3

Or see this region's nucleotide sequence