Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04615

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04610 and BWI76_RS04615 overlap by 25 nucleotidesBWI76_RS04615 and BWI76_RS04620 are separated by 162 nucleotides BWI76_RS04610: BWI76_RS04610 - thiamine/thiamine pyrophosphate ABC transporter permease ThiP, at 959,191 to 960,801 _RS04610 BWI76_RS04615: BWI76_RS04615 - thiamine transporter substrate binding subunit, at 960,777 to 961,760 _RS04615 BWI76_RS04620: BWI76_RS04620 - transcriptional regulator SgrR, at 961,923 to 963,578 _RS04620 Position (kb) 960 961 962Strain fitness (log2 ratio) -2 -1 0 1at 959.799 kb on + strand, within BWI76_RS04610at 959.944 kb on + strand, within BWI76_RS04610at 959.944 kb on + strand, within BWI76_RS04610at 960.041 kb on - strandat 960.227 kb on + strand, within BWI76_RS04610at 960.236 kb on - strand, within BWI76_RS04610at 960.254 kb on - strand, within BWI76_RS04610at 960.445 kb on + strand, within BWI76_RS04610at 960.448 kb on - strand, within BWI76_RS04610at 960.506 kb on - strand, within BWI76_RS04610at 960.555 kb on + strand, within BWI76_RS04610at 960.909 kb on - strand, within BWI76_RS04615at 961.024 kb on + strand, within BWI76_RS04615at 961.132 kb on - strand, within BWI76_RS04615at 961.132 kb on - strand, within BWI76_RS04615at 961.321 kb on + strand, within BWI76_RS04615at 961.329 kb on - strand, within BWI76_RS04615at 961.495 kb on + strand, within BWI76_RS04615at 961.674 kb on - strandat 962.083 kb on + strandat 962.166 kb on - strand, within BWI76_RS04620at 962.225 kb on - strand, within BWI76_RS04620at 962.234 kb on + strand, within BWI76_RS04620at 962.615 kb on + strand, within BWI76_RS04620at 962.759 kb on + strand, within BWI76_RS04620

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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959,799 + BWI76_RS04610 0.38 -0.0
959,944 + BWI76_RS04610 0.47 +1.3
959,944 + BWI76_RS04610 0.47 +0.3
960,041 - -1.2
960,227 + BWI76_RS04610 0.64 -0.2
960,236 - BWI76_RS04610 0.65 +0.0
960,254 - BWI76_RS04610 0.66 +0.8
960,445 + BWI76_RS04610 0.78 -1.8
960,448 - BWI76_RS04610 0.78 -0.2
960,506 - BWI76_RS04610 0.82 +0.4
960,555 + BWI76_RS04610 0.85 +0.6
960,909 - BWI76_RS04615 0.13 +1.4
961,024 + BWI76_RS04615 0.25 -0.0
961,132 - BWI76_RS04615 0.36 -0.7
961,132 - BWI76_RS04615 0.36 +0.2
961,321 + BWI76_RS04615 0.55 -0.4
961,329 - BWI76_RS04615 0.56 +0.3
961,495 + BWI76_RS04615 0.73 -1.1
961,674 - +0.2
962,083 + +0.5
962,166 - BWI76_RS04620 0.15 -0.7
962,225 - BWI76_RS04620 0.18 -0.0
962,234 + BWI76_RS04620 0.19 -1.1
962,615 + BWI76_RS04620 0.42 +0.3
962,759 + BWI76_RS04620 0.50 -0.5

Or see this region's nucleotide sequence