Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24715 and BWI76_RS24720 are separated by 15 nucleotides BWI76_RS24720 and BWI76_RS24725 are separated by 94 nucleotides BWI76_RS24725 and BWI76_RS24730 are separated by 18 nucleotides
BWI76_RS24715: BWI76_RS24715 - serine/threonine transporter SstT, at 5,154,087 to 5,155,334
_RS24715
BWI76_RS24720: BWI76_RS24720 - hypothetical protein, at 5,155,350 to 5,155,904
_RS24720
BWI76_RS24725: BWI76_RS24725 - altronate hydrolase, at 5,155,999 to 5,157,486
_RS24725
BWI76_RS24730: BWI76_RS24730 - uronate isomerase, at 5,157,505 to 5,158,917
_RS24730
Position (kb) 5155
5156
5157
5158 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5155.006 kb on + strand, within BWI76_RS24715 at 5155.365 kb on + strand at 5155.632 kb on - strand, within BWI76_RS24720 at 5155.811 kb on + strand, within BWI76_RS24720 at 5155.886 kb on - strand at 5156.052 kb on + strand at 5156.054 kb on + strand at 5156.054 kb on + strand at 5156.088 kb on - strand at 5156.090 kb on - strand at 5156.278 kb on + strand, within BWI76_RS24725 at 5156.298 kb on - strand, within BWI76_RS24725 at 5156.325 kb on + strand, within BWI76_RS24725 at 5156.497 kb on - strand, within BWI76_RS24725 at 5156.827 kb on - strand, within BWI76_RS24725 at 5156.901 kb on - strand, within BWI76_RS24725 at 5157.201 kb on + strand, within BWI76_RS24725 at 5157.351 kb on + strand at 5157.359 kb on - strand at 5157.359 kb on - strand at 5157.359 kb on - strand at 5157.359 kb on - strand at 5157.417 kb on - strand at 5157.483 kb on + strand at 5157.659 kb on + strand, within BWI76_RS24730 at 5157.713 kb on + strand, within BWI76_RS24730 at 5157.903 kb on - strand, within BWI76_RS24730 at 5158.062 kb on - strand, within BWI76_RS24730 at 5158.088 kb on + strand, within BWI76_RS24730 at 5158.259 kb on + strand, within BWI76_RS24730 at 5158.353 kb on - strand, within BWI76_RS24730
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 5,155,006 + BWI76_RS24715 0.74 +0.0 5,155,365 + +0.4 5,155,632 - BWI76_RS24720 0.51 -0.3 5,155,811 + BWI76_RS24720 0.83 +1.2 5,155,886 - -0.1 5,156,052 + -2.3 5,156,054 + -0.4 5,156,054 + +1.1 5,156,088 - -3.2 5,156,090 - +0.5 5,156,278 + BWI76_RS24725 0.19 +0.6 5,156,298 - BWI76_RS24725 0.20 +0.6 5,156,325 + BWI76_RS24725 0.22 -0.5 5,156,497 - BWI76_RS24725 0.33 +2.3 5,156,827 - BWI76_RS24725 0.56 +0.0 5,156,901 - BWI76_RS24725 0.61 +1.3 5,157,201 + BWI76_RS24725 0.81 +0.3 5,157,351 + +0.3 5,157,359 - +1.3 5,157,359 - +0.5 5,157,359 - +0.1 5,157,359 - +0.5 5,157,417 - -1.4 5,157,483 + +0.2 5,157,659 + BWI76_RS24730 0.11 -0.0 5,157,713 + BWI76_RS24730 0.15 +0.4 5,157,903 - BWI76_RS24730 0.28 -2.2 5,158,062 - BWI76_RS24730 0.39 -0.0 5,158,088 + BWI76_RS24730 0.41 -0.3 5,158,259 + BWI76_RS24730 0.53 +0.3 5,158,353 - BWI76_RS24730 0.60 +1.5
Or see this region's nucleotide sequence