Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21950 and BWI76_RS21955 are separated by 35 nucleotides BWI76_RS21955 and BWI76_RS21960 are separated by 135 nucleotides BWI76_RS21960 and BWI76_RS21965 are separated by 18 nucleotides
BWI76_RS21950: BWI76_RS21950 - prephenate dehydratase/arogenate dehydratase, at 4,585,448 to 4,586,221
_RS21950
BWI76_RS21955: BWI76_RS21955 - transferase, at 4,586,257 to 4,587,051
_RS21955
BWI76_RS21960: BWI76_RS21960 - fimbrial protein, at 4,587,187 to 4,588,281
_RS21960
BWI76_RS21965: BWI76_RS21965 - export and assembly usher protein of type 1 fimbriae, at 4,588,300 to 4,590,834
_RS21965
Position (kb) 4587
4588
4589 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4586.309 kb on - strand at 4586.419 kb on + strand, within BWI76_RS21955 at 4586.536 kb on + strand, within BWI76_RS21955 at 4586.537 kb on + strand, within BWI76_RS21955 at 4586.676 kb on + strand, within BWI76_RS21955 at 4586.727 kb on - strand, within BWI76_RS21955 at 4586.897 kb on + strand, within BWI76_RS21955 at 4586.911 kb on + strand, within BWI76_RS21955 at 4586.980 kb on - strand at 4587.031 kb on - strand at 4587.326 kb on + strand, within BWI76_RS21960 at 4587.435 kb on - strand, within BWI76_RS21960 at 4587.461 kb on + strand, within BWI76_RS21960 at 4587.620 kb on + strand, within BWI76_RS21960 at 4587.681 kb on - strand, within BWI76_RS21960 at 4587.712 kb on + strand, within BWI76_RS21960 at 4588.085 kb on + strand, within BWI76_RS21960 at 4588.108 kb on + strand, within BWI76_RS21960 at 4588.300 kb on - strand at 4588.453 kb on - strand at 4588.784 kb on - strand, within BWI76_RS21965 at 4588.903 kb on + strand, within BWI76_RS21965 at 4588.911 kb on - strand, within BWI76_RS21965 at 4588.911 kb on - strand, within BWI76_RS21965 at 4588.971 kb on + strand, within BWI76_RS21965 at 4588.980 kb on - strand, within BWI76_RS21965 at 4589.001 kb on - strand, within BWI76_RS21965 at 4589.134 kb on + strand, within BWI76_RS21965 at 4589.139 kb on + strand, within BWI76_RS21965 at 4589.139 kb on + strand, within BWI76_RS21965 at 4589.147 kb on - strand, within BWI76_RS21965 at 4589.235 kb on + strand, within BWI76_RS21965
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 4,586,309 - -0.0 4,586,419 + BWI76_RS21955 0.20 +0.3 4,586,536 + BWI76_RS21955 0.35 -0.3 4,586,537 + BWI76_RS21955 0.35 -0.2 4,586,676 + BWI76_RS21955 0.53 +0.6 4,586,727 - BWI76_RS21955 0.59 +1.0 4,586,897 + BWI76_RS21955 0.81 -0.4 4,586,911 + BWI76_RS21955 0.82 +0.1 4,586,980 - +0.3 4,587,031 - -2.3 4,587,326 + BWI76_RS21960 0.13 +0.0 4,587,435 - BWI76_RS21960 0.23 +2.1 4,587,461 + BWI76_RS21960 0.25 +0.7 4,587,620 + BWI76_RS21960 0.40 +0.4 4,587,681 - BWI76_RS21960 0.45 -0.1 4,587,712 + BWI76_RS21960 0.48 -1.3 4,588,085 + BWI76_RS21960 0.82 +0.6 4,588,108 + BWI76_RS21960 0.84 +0.3 4,588,300 - +1.6 4,588,453 - +0.9 4,588,784 - BWI76_RS21965 0.19 -1.6 4,588,903 + BWI76_RS21965 0.24 -0.1 4,588,911 - BWI76_RS21965 0.24 +0.5 4,588,911 - BWI76_RS21965 0.24 +2.9 4,588,971 + BWI76_RS21965 0.26 -0.6 4,588,980 - BWI76_RS21965 0.27 -2.1 4,589,001 - BWI76_RS21965 0.28 +0.0 4,589,134 + BWI76_RS21965 0.33 -0.1 4,589,139 + BWI76_RS21965 0.33 -0.1 4,589,139 + BWI76_RS21965 0.33 -0.1 4,589,147 - BWI76_RS21965 0.33 +3.0 4,589,235 + BWI76_RS21965 0.37 +0.2
Or see this region's nucleotide sequence