Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18655

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18645 and BWI76_RS18650 are separated by 71 nucleotidesBWI76_RS18650 and BWI76_RS18655 are separated by 46 nucleotidesBWI76_RS18655 and BWI76_RS18660 are separated by 75 nucleotides BWI76_RS18645: BWI76_RS18645 - type-1 fimbrial protein subunit A, at 3,865,545 to 3,866,090 _RS18645 BWI76_RS18650: BWI76_RS18650 - fimbrial protein, at 3,866,162 to 3,866,698 _RS18650 BWI76_RS18655: BWI76_RS18655 - chaperone FimC, periplasmic, at 3,866,745 to 3,867,455 _RS18655 BWI76_RS18660: BWI76_RS18660 - hypothetical protein, at 3,867,531 to 3,870,158 _RS18660 Position (kb) 3866 3867 3868Strain fitness (log2 ratio) -1 0 1at 3865.756 kb on + strand, within BWI76_RS18645at 3865.759 kb on - strand, within BWI76_RS18645at 3865.761 kb on + strand, within BWI76_RS18645at 3865.887 kb on - strand, within BWI76_RS18645at 3865.907 kb on - strand, within BWI76_RS18645at 3865.909 kb on + strand, within BWI76_RS18645at 3865.990 kb on + strand, within BWI76_RS18645at 3866.119 kb on + strandat 3866.394 kb on + strand, within BWI76_RS18650at 3866.404 kb on + strand, within BWI76_RS18650at 3866.438 kb on + strand, within BWI76_RS18650at 3866.517 kb on + strand, within BWI76_RS18650at 3866.525 kb on - strand, within BWI76_RS18650at 3866.552 kb on - strand, within BWI76_RS18650at 3866.849 kb on + strand, within BWI76_RS18655at 3867.285 kb on - strand, within BWI76_RS18655at 3867.421 kb on + strandat 3867.473 kb on + strandat 3867.474 kb on + strandat 3867.512 kb on + strandat 3867.580 kb on - strandat 3867.653 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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3,865,756 + BWI76_RS18645 0.39 +0.7
3,865,759 - BWI76_RS18645 0.39 +0.2
3,865,761 + BWI76_RS18645 0.40 -1.2
3,865,887 - BWI76_RS18645 0.63 +0.2
3,865,907 - BWI76_RS18645 0.66 -0.1
3,865,909 + BWI76_RS18645 0.67 +0.6
3,865,990 + BWI76_RS18645 0.82 +1.0
3,866,119 + -0.1
3,866,394 + BWI76_RS18650 0.43 +1.1
3,866,404 + BWI76_RS18650 0.45 +0.2
3,866,438 + BWI76_RS18650 0.51 -1.0
3,866,517 + BWI76_RS18650 0.66 +0.5
3,866,525 - BWI76_RS18650 0.68 -1.7
3,866,552 - BWI76_RS18650 0.73 -0.7
3,866,849 + BWI76_RS18655 0.15 +0.5
3,867,285 - BWI76_RS18655 0.76 +0.4
3,867,421 + +0.0
3,867,473 + -0.5
3,867,474 + +0.3
3,867,512 + +1.1
3,867,580 - +0.1
3,867,653 + +0.5

Or see this region's nucleotide sequence