Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07645 and BWI76_RS07650 are separated by 60 nucleotides BWI76_RS07650 and BWI76_RS07655 are separated by 17 nucleotides
BWI76_RS07645: BWI76_RS07645 - short-chain dehydrogenase/reductase, at 1,618,930 to 1,619,727
_RS07645
BWI76_RS07650: BWI76_RS07650 - ABC transporter permease, at 1,619,788 to 1,620,843
_RS07650
BWI76_RS07655: BWI76_RS07655 - putative ribose ABC transport system ATP-binding component, at 1,620,861 to 1,622,405
_RS07655
Position (kb)
1619
1620
1621 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1619.180 kb on - strand, within BWI76_RS07645 at 1619.468 kb on - strand, within BWI76_RS07645 at 1619.745 kb on - strand at 1619.828 kb on - strand at 1619.838 kb on + strand at 1620.092 kb on + strand, within BWI76_RS07650 at 1620.368 kb on + strand, within BWI76_RS07650 at 1620.376 kb on - strand, within BWI76_RS07650 at 1620.667 kb on - strand, within BWI76_RS07650 at 1620.726 kb on + strand, within BWI76_RS07650 at 1620.734 kb on - strand, within BWI76_RS07650 at 1620.734 kb on - strand, within BWI76_RS07650 at 1620.893 kb on + strand at 1621.299 kb on + strand, within BWI76_RS07655 at 1621.358 kb on - strand, within BWI76_RS07655 at 1621.465 kb on + strand, within BWI76_RS07655 at 1621.466 kb on - strand, within BWI76_RS07655 at 1621.473 kb on - strand, within BWI76_RS07655 at 1621.473 kb on - strand, within BWI76_RS07655 at 1621.497 kb on - strand, within BWI76_RS07655 at 1621.539 kb on + strand at 1621.546 kb on + strand, within BWI76_RS07655 at 1621.546 kb on + strand, within BWI76_RS07655 at 1621.554 kb on - strand, within BWI76_RS07655 at 1621.556 kb on - strand, within BWI76_RS07655 at 1621.561 kb on - strand, within BWI76_RS07655 at 1621.588 kb on - strand, within BWI76_RS07655 at 1621.689 kb on - strand, within BWI76_RS07655 at 1621.760 kb on + strand, within BWI76_RS07655 at 1621.771 kb on - strand, within BWI76_RS07655 at 1621.785 kb on + strand, within BWI76_RS07655 at 1621.811 kb on - strand, within BWI76_RS07655 at 1621.814 kb on + strand, within BWI76_RS07655 at 1621.830 kb on - strand, within BWI76_RS07655
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 1,619,180 - BWI76_RS07645 0.31 -0.1 1,619,468 - BWI76_RS07645 0.67 -1.8 1,619,745 - -1.9 1,619,828 - -1.0 1,619,838 + +0.3 1,620,092 + BWI76_RS07650 0.29 -2.8 1,620,368 + BWI76_RS07650 0.55 +0.0 1,620,376 - BWI76_RS07650 0.56 -0.0 1,620,667 - BWI76_RS07650 0.83 +0.4 1,620,726 + BWI76_RS07650 0.89 +0.0 1,620,734 - BWI76_RS07650 0.90 +0.5 1,620,734 - BWI76_RS07650 0.90 +0.1 1,620,893 + +0.1 1,621,299 + BWI76_RS07655 0.28 +0.1 1,621,358 - BWI76_RS07655 0.32 +0.4 1,621,465 + BWI76_RS07655 0.39 -0.9 1,621,466 - BWI76_RS07655 0.39 +0.4 1,621,473 - BWI76_RS07655 0.40 -0.1 1,621,473 - BWI76_RS07655 0.40 -0.5 1,621,497 - BWI76_RS07655 0.41 -2.7 1,621,539 + -0.3 1,621,546 + BWI76_RS07655 0.44 +0.5 1,621,546 + BWI76_RS07655 0.44 -3.2 1,621,554 - BWI76_RS07655 0.45 -0.1 1,621,556 - BWI76_RS07655 0.45 -0.2 1,621,561 - BWI76_RS07655 0.45 -0.7 1,621,588 - BWI76_RS07655 0.47 +0.7 1,621,689 - BWI76_RS07655 0.54 -0.1 1,621,760 + BWI76_RS07655 0.58 +1.3 1,621,771 - BWI76_RS07655 0.59 +1.0 1,621,785 + BWI76_RS07655 0.60 +2.3 1,621,811 - BWI76_RS07655 0.61 -1.5 1,621,814 + BWI76_RS07655 0.62 +0.8 1,621,830 - BWI76_RS07655 0.63 -0.3
Or see this region's nucleotide sequence