Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06560

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06550 and BWI76_RS06555 are separated by 110 nucleotidesBWI76_RS06555 and BWI76_RS06560 are separated by 201 nucleotidesBWI76_RS06560 and BWI76_RS06565 are separated by 66 nucleotides BWI76_RS06550: BWI76_RS06550 - competence protein ComEA, at 1,377,773 to 1,378,138 _RS06550 BWI76_RS06555: BWI76_RS06555 - thioesterase superfamily protein, at 1,378,249 to 1,378,650 _RS06555 BWI76_RS06560: BWI76_RS06560 - 7-cyano-7-deazaguanine synthase QueC, at 1,378,852 to 1,379,547 _RS06560 BWI76_RS06565: BWI76_RS06565 - putative periplasmic solute-binding protein, at 1,379,614 to 1,381,314 _RS06565 Position (kb) 1378 1379 1380Strain fitness (log2 ratio) -1 0 1 2at 1377.918 kb on + strand, within BWI76_RS06550at 1378.025 kb on + strand, within BWI76_RS06550at 1378.079 kb on - strand, within BWI76_RS06550at 1378.745 kb on + strandat 1378.987 kb on + strand, within BWI76_RS06560at 1378.992 kb on + strand, within BWI76_RS06560at 1379.119 kb on + strand, within BWI76_RS06560at 1379.156 kb on - strand, within BWI76_RS06560at 1379.766 kb on - strandat 1379.929 kb on - strand, within BWI76_RS06565at 1380.101 kb on - strand, within BWI76_RS06565at 1380.215 kb on - strand, within BWI76_RS06565at 1380.284 kb on - strand, within BWI76_RS06565at 1380.416 kb on - strand, within BWI76_RS06565

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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1,377,918 + BWI76_RS06550 0.40 +0.1
1,378,025 + BWI76_RS06550 0.69 -0.5
1,378,079 - BWI76_RS06550 0.84 +0.2
1,378,745 + +0.9
1,378,987 + BWI76_RS06560 0.19 -0.7
1,378,992 + BWI76_RS06560 0.20 +0.8
1,379,119 + BWI76_RS06560 0.38 +1.1
1,379,156 - BWI76_RS06560 0.44 +2.0
1,379,766 - +0.6
1,379,929 - BWI76_RS06565 0.19 -0.2
1,380,101 - BWI76_RS06565 0.29 -0.1
1,380,215 - BWI76_RS06565 0.35 +0.8
1,380,284 - BWI76_RS06565 0.39 +1.5
1,380,416 - BWI76_RS06565 0.47 -0.1

Or see this region's nucleotide sequence